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AgeCommit message (Collapse)Author
2015-04-10Cleanup: imports (formatting)Campbell Barton
2015-03-05Cleanup: typosCampbell Barton
2014-08-20some version updateClemens Barth
2014-05-21Maintenance to bl_info, remove redundant tracker URL'sCampbell Barton
2014-05-17remove '.' from descriptionsCampbell Barton
2014-02-04Clean-up: Updated bl_info['tracker_url'] to developer.blender.org, some ↵CoDEmanX
minor other edits
2013-06-13Importing a PDB structure where the atoms are shown as mesh balls created anClemens Barth
error. This bug was fixed. Blendphys.
2013-04-041. After importing a structure, the sticks were not selected: fixedClemens Barth
2. Small cleanups of the code 3. New feature: The sticks can be represented as entire cylinders. One can choose either single cylinders, which are parented to an empty, or one single mesh object including all sticks. This feature is quite suitable for structures, which count more than 1000 sticks. When the sticks are represented by one single mesh object the handling in the 3D scene is much faster. Note that the layout of the preferences in the file dialog had to be also changed since there are more options for sticks now. Blendphys.
2013-03-22The new feature: the sticks represented by a skin and subdivision modifierClemens Barth
do also have a material now. - I simply forgot that to include. Blendphys.
2013-03-22Code cleanup: the code in the main function for drawing the sticks has Clemens Barth
been removed and put into a separate function. Blendphys.
2013-03-22Code cleanup: the code in the main function for drawing the atoms (balls) has Clemens Barth
been removed and put into a separate function. Blendphys.
2013-03-22Code cleanup: the code in the main function for inserting a camera and light Clemens Barth
source into the 3D scene has been removed and put into a separate function. Blendphys.
2013-03-22New feature: Somebody asked me to make use of the skin and subdivision modifier Clemens Barth
in Blender, which both can be used to draw the sticks. This is what I have done and implemented. The code has become a bit 'unreadable' there will be after some other commitments including some code cleanups. Blendphys.
2013-01-16Quite annoying: When importing an atomic structure with sticks, the sticksClemens Barth
were not automatically smoothened. I changed the default value from False to True. Blendphys.
2012-12-19fix [#33615] bl_info (2,6,5,0) vs. (2,65,0) ?Campbell Barton
make addons blender versions consistent
2012-11-14use alternate syntax to clear listsCampbell Barton
2012-11-101. New: NURBS, mesh and meta balls can now be chosen as atoms.Clemens Barth
I also updated the Wiki page. 2. There was a small mistake introduced by the last commits. This has been fixed. 3. Code cleaning Blendphys
2012-11-10As in the case of the XYZ IE, names of classes and functions were changed,Clemens Barth
according to the "Style Guide for Python Code" (http://www.python.org/dev/peps/pep-0008/) and the recent review (http://codereview.appspot.com/6815052). Some slight changes were done, too. Extensive tests have shown that the code is still well working. Blendphys
2012-11-04Also here: rotation of camera fixed.Clemens Barth
Blendphys
2012-11-03As discussed a couple of times in the IRC chat, we decided to separate the Clemens Barth
panel from the import/export addons. This means that the panel has had to be removed also from the PDB importer/exporter. This is what I have done. Attention, this is a major change of the Atomic Blender PDB importer/exporter! A lot of test today have shown, that the new version of the PDB importer/exporter has not lost its stability. In the next days, I will perform other stability tests. Blendphys
2012-10-31Also in the PDB IO: relict from old times, which has been removedClemens Barth
Blendphys.
2012-10-14Some cosmetics ... .Clemens Barth
2012-10-14When exporting structures from Blender into a PDB file it happened Clemens Barth
sometimes that the xyz positions of the atoms weren't correctly stored. Bug fixed.
2012-10-13Recently, I suddenly had an error message always when adding a camera duringClemens Barth
import. I have no idea why that happened out of a sudden. Anyway, I removed this bug.
2012-07-04More spell checking.Bastien Montagne
2012-05-301. There was a bug when separating a single ball from a duplivertsClemens Barth
structure upon pushing the button "Separate atom" in the Atomic Blender panel. 2. Thanks to an inspirations from <CoDEmanX> I changed the code such that all selected atoms (vertices) in the "Edit Mode" are seperated at once. (new feature) Blendphys.
2012-05-27Some cosmetics ...Clemens Barth
Blendphys.
2012-04-18The Atomic Blender panel is loaded correctly when a blend file is loaded.Clemens Barth
Blendphys.
2012-03-24- Option 'smooth' permits now a better 'polishing' of the sticks.Clemens Barth
- The default value for the precision of the sticks (unit length) has been put from 0.2 onto 0.05. If the sticks are shown, they do not overlapp anymore. - Code cleaning - Due to the recent large changes of the code the addon has been tested with even more PDB files. Blendphys PS: see recent comment here: http://blenderartists.org/forum/showthread.php?235003-Atomic-Blender-for-loading-PDB-files-into-Blender-2.5&p=2079416&viewfull=1#post2079416
2012-03-22Some code cleaning ...Clemens Barth
Blendphys
2012-03-221. New: The user can now decide whether the panel is always, once or never ↵Clemens Barth
shown after a PDB file is loaded. Note that the panel is quite essential since it helps quickly modifying PDB structures. 2. Some code cleaning 3. Wiki has been updated Blendphys
2012-03-22Attention: big changes in __init__.py, almost no changes in import_pdb.pyClemens Barth
and export_pdb.py 1. With respect to the propositions made by Campbell and Sebastian (see http://projects.blender.org/tracker/?func=detail&group_id=153&aid=29226&atid=469) I changed the code. The PDB IO has now the preset option in the file dialog of the importer and exporter. 2. Furthermore, I have put all properties into one group, which is located in bpy.contect.scene. 3. Some code cleaning Soon, I will put in a new option (next days): the user can decide whether the panel is always, once or never shown after a PDB file is loaded. Note that the panel is essential for me and also my students. It helps quickly modifying PDB structures. Blendphys
2012-03-11Addons:Thomas Dinges
* Remove api info, this is not used anymore.
2012-03-10PDB - Importer/ExporterClemens Barth
======================= - Update of date Blendphys
2012-03-09ImporterClemens Barth
======== + normalization ... Blendphys
2012-03-09ImporterClemens Barth
======== I forgot a '-' in the vector ... Blendphys
2012-03-09ImporterClemens Barth
======== I removed a small bug: Double or triple bonds were not shown for atoms, which have only one neighbour. BTW: I updated the wiki. Blendphys
2012-03-01ImporterClemens Barth
======== The length of the 'unit stick' of the dupliface structure that is used for representing the sticks can now be explicitly chosen before loading a PDB structure. It was always on 0.05 Angstrom, which is a quite small value. Loading structures with lots of sticks was therefore very slow. The value can now be changed [from 0 to infinity]. I have set the default value onto 0.2 Angstrom, which should be sufficient. Note: The smaller the value, the better is the length precision. However, the more single units need to be drawn (more vertices). By time, I will change the wiki ... in some days. Blendphys
2012-02-29ExporterClemens Barth
- Either active objects with a proper element name or all active objects are exported depending on EnumProperty in File dialog: all <-> element - Removed a bug in the exporter: 'import_pdb.ATOM_PDB_ELEMENTS_DEFAULT' is used instead of 'import_pdb.ATOM_PDB_ELEMENTS' <= is sometimes empty list Importer - The name of the representive ball of a dupliverts technique is now shorter: from 'Ball (NURBS)_<element>' to 'Ball_<element>'; The name of the element is not cut in the outliner. Blendphys
2012-02-27MHX importer: temporary commit for Bmesh. UV coordinates are ignored, but at ↵Thomas Larsson
least the script does not crash.
2012-02-08Dear all.Clemens Barth
I updated the date of change. Blendphys
2012-02-08Dear all.Clemens Barth
Bug: The script crashed when sticks with the colors of atoms were drawn in the presence of TER lines in the PDB file. This bug has been removed. Blendphys
2012-01-19- Removed dots from the end of descriptionSergey Sharybin
- Check for keymap availability to suppress warning messages when running blender in background mode
2012-01-14remove api field, was never used.Campbell Barton
2011-12-31Dear all.Clemens Barth
Here comes version 1.2 ! New === 1. Double and tripple bonds can now be displayed. The option 'bonds' needs to be checked. One can also choose the distance between the sticks. 2. If the bool 'smooth' is checked the shape of the sticks is more round. Changes ======= - Buttons, which depend on other buttons, are grayed out as soon as the 'master button' is deactivated. - Other small bug fixes With this version 1.2 I consider the PDB project as 'accomplished' so far. Of course, I will keep an eye on any critics, changes, bug fixes and so on. Please, let me know if you find any bugs. Thanks. Happy New Year! Blendphys
2011-12-27fix for wiki linkBrendon Murphy
2011-12-27fix for incorrect tracker linkBrendon Murphy
2011-12-26... only small changes, that's it ...Clemens Barth
Cheers, Blendphys
2011-12-26Dear all.Clemens Barth
1. New option: sticks connecting atoms can have now the color of the atoms. 2. New button in the panel: 'Show sticks' scales the atom radii such that only the sticks are visible. 3. A bug was removed: Scaling atoms with a specific name scaled also the sticks. This does not happen anymore. - Due to the changes, the script has version 1.1 - To be done: Update of both Wiki pages (next days) - Probably, I commit a 2nd time today. Merry Christams, Blendphys
2011-12-22Dear all.Clemens Barth
1. Changes of the 'Atomic Blender - PDB importer' panel. I've grouped specific in/outputs and buttons by using boxes. Now, there is some order in the panel. 2. Better precision for sticks 3. No other changes otherwise ... Merry Christams, Blendphys
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