/*
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software Foundation,
 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
 * meshlaplacian.c: Algorithms using the mesh laplacian.
 */

/** \file
 * \ingroup edarmature
 */

#include "MEM_guardedalloc.h"

#include "DNA_mesh_types.h"
#include "DNA_meshdata_types.h"
#include "DNA_object_types.h"
#include "DNA_scene_types.h"

#include "BLI_alloca.h"
#include "BLI_edgehash.h"
#include "BLI_math.h"
#include "BLI_memarena.h"
#include "BLI_string.h"

#include "BLT_translation.h"

#include "BKE_bvhutils.h"
#include "BKE_mesh.h"
#include "BKE_mesh_runtime.h"
#include "BKE_modifier.h"

#include "ED_armature.h"
#include "ED_mesh.h"

#include "DEG_depsgraph.h"

#include "eigen_capi.h"

#include "meshlaplacian.h"

/* ************* XXX *************** */
static void waitcursor(int UNUSED(val))
{
}
static void progress_bar(int UNUSED(dummy_val), const char *UNUSED(dummy))
{
}
static void start_progress_bar(void)
{
}
static void end_progress_bar(void)
{
}
static void error(const char *str)
{
  printf("error: %s\n", str);
}
/* ************* XXX *************** */

/************************** Laplacian System *****************************/

struct LaplacianSystem {
  LinearSolver *context; /* linear solver */

  int totvert, totface;

  float **verts;        /* vertex coordinates */
  float *varea;         /* vertex weights for laplacian computation */
  char *vpinned;        /* vertex pinning */
  int (*faces)[3];      /* face vertex indices */
  float (*fweights)[3]; /* cotangent weights per face */

  int areaweights;    /* use area in cotangent weights? */
  int storeweights;   /* store cotangent weights in fweights */
  bool variablesdone; /* variables set in linear system */

  EdgeHash *edgehash; /* edge hash for construction */

  struct HeatWeighting {
    const MLoopTri *mlooptri;
    const MLoop *mloop; /* needed to find vertices by index */
    int totvert;
    int tottri;
    float (*verts)[3]; /* vertex coordinates */
    float (*vnors)[3]; /* vertex normals */

    float (*root)[3]; /* bone root */
    float (*tip)[3];  /* bone tip */
    int numsource;

    float *H;       /* diagonal H matrix */
    float *p;       /* values from all p vectors */
    float *mindist; /* minimum distance to a bone for all vertices */

    BVHTree *bvhtree;        /* ray tracing acceleration structure */
    const MLoopTri **vltree; /* a looptri that the vertex belongs to */
  } heat;
};

/* Laplacian matrix construction */

/* Computation of these weights for the laplacian is based on:
 * "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds",
 * Meyer et al, 2002. Section 3.5, formula (8).
 *
 * We do it a bit different by going over faces instead of going over each
 * vertex and adjacent faces, since we don't store this adjacency. Also, the
 * formulas are tweaked a bit to work for non-manifold meshes. */

static void laplacian_increase_edge_count(EdgeHash *edgehash, int v1, int v2)
{
  void **p;

  if (BLI_edgehash_ensure_p(edgehash, v1, v2, &p)) {
    *p = (void *)((intptr_t)*p + (intptr_t)1);
  }
  else {
    *p = (void *)((intptr_t)1);
  }
}

static int laplacian_edge_count(EdgeHash *edgehash, int v1, int v2)
{
  return (int)(intptr_t)BLI_edgehash_lookup(edgehash, v1, v2);
}

static void laplacian_triangle_area(LaplacianSystem *sys, int i1, int i2, int i3)
{
  float t1, t2, t3, len1, len2, len3, area;
  float *varea = sys->varea, *v1, *v2, *v3;
  int obtuse = 0;

  v1 = sys->verts[i1];
  v2 = sys->verts[i2];
  v3 = sys->verts[i3];

  t1 = cotangent_tri_weight_v3(v1, v2, v3);
  t2 = cotangent_tri_weight_v3(v2, v3, v1);
  t3 = cotangent_tri_weight_v3(v3, v1, v2);

  if (angle_v3v3v3(v2, v1, v3) > DEG2RADF(90.0f)) {
    obtuse = 1;
  }
  else if (angle_v3v3v3(v1, v2, v3) > DEG2RADF(90.0f)) {
    obtuse = 2;
  }
  else if (angle_v3v3v3(v1, v3, v2) > DEG2RADF(90.0f)) {
    obtuse = 3;
  }

  if (obtuse > 0) {
    area = area_tri_v3(v1, v2, v3);

    varea[i1] += (obtuse == 1) ? area : area * 0.5f;
    varea[i2] += (obtuse == 2) ? area : area * 0.5f;
    varea[i3] += (obtuse == 3) ? area : area * 0.5f;
  }
  else {
    len1 = len_v3v3(v2, v3);
    len2 = len_v3v3(v1, v3);
    len3 = len_v3v3(v1, v2);

    t1 *= len1 * len1;
    t2 *= len2 * len2;
    t3 *= len3 * len3;

    varea[i1] += (t2 + t3) * 0.25f;
    varea[i2] += (t1 + t3) * 0.25f;
    varea[i3] += (t1 + t2) * 0.25f;
  }
}

static void laplacian_triangle_weights(LaplacianSystem *sys, int f, int i1, int i2, int i3)
{
  float t1, t2, t3;
  float *varea = sys->varea, *v1, *v2, *v3;

  v1 = sys->verts[i1];
  v2 = sys->verts[i2];
  v3 = sys->verts[i3];

  /* instead of *0.5 we divided by the number of faces of the edge, it still
   * needs to be verified that this is indeed the correct thing to do! */
  t1 = cotangent_tri_weight_v3(v1, v2, v3) / laplacian_edge_count(sys->edgehash, i2, i3);
  t2 = cotangent_tri_weight_v3(v2, v3, v1) / laplacian_edge_count(sys->edgehash, i3, i1);
  t3 = cotangent_tri_weight_v3(v3, v1, v2) / laplacian_edge_count(sys->edgehash, i1, i2);

  EIG_linear_solver_matrix_add(sys->context, i1, i1, (t2 + t3) * varea[i1]);
  EIG_linear_solver_matrix_add(sys->context, i2, i2, (t1 + t3) * varea[i2]);
  EIG_linear_solver_matrix_add(sys->context, i3, i3, (t1 + t2) * varea[i3]);

  EIG_linear_solver_matrix_add(sys->context, i1, i2, -t3 * varea[i1]);
  EIG_linear_solver_matrix_add(sys->context, i2, i1, -t3 * varea[i2]);

  EIG_linear_solver_matrix_add(sys->context, i2, i3, -t1 * varea[i2]);
  EIG_linear_solver_matrix_add(sys->context, i3, i2, -t1 * varea[i3]);

  EIG_linear_solver_matrix_add(sys->context, i3, i1, -t2 * varea[i3]);
  EIG_linear_solver_matrix_add(sys->context, i1, i3, -t2 * varea[i1]);

  if (sys->storeweights) {
    sys->fweights[f][0] = t1 * varea[i1];
    sys->fweights[f][1] = t2 * varea[i2];
    sys->fweights[f][2] = t3 * varea[i3];
  }
}

static LaplacianSystem *laplacian_system_construct_begin(int totvert, int totface, int lsq)
{
  LaplacianSystem *sys;

  sys = MEM_callocN(sizeof(LaplacianSystem), "LaplacianSystem");

  sys->verts = MEM_callocN(sizeof(float *) * totvert, "LaplacianSystemVerts");
  sys->vpinned = MEM_callocN(sizeof(char) * totvert, "LaplacianSystemVpinned");
  sys->faces = MEM_callocN(sizeof(int) * 3 * totface, "LaplacianSystemFaces");

  sys->totvert = 0;
  sys->totface = 0;

  sys->areaweights = 1;
  sys->storeweights = 0;

  /* create linear solver */
  if (lsq) {
    sys->context = EIG_linear_least_squares_solver_new(0, totvert, 1);
  }
  else {
    sys->context = EIG_linear_solver_new(0, totvert, 1);
  }

  return sys;
}

void laplacian_add_vertex(LaplacianSystem *sys, float *co, int pinned)
{
  sys->verts[sys->totvert] = co;
  sys->vpinned[sys->totvert] = pinned;
  sys->totvert++;
}

void laplacian_add_triangle(LaplacianSystem *sys, int v1, int v2, int v3)
{
  sys->faces[sys->totface][0] = v1;
  sys->faces[sys->totface][1] = v2;
  sys->faces[sys->totface][2] = v3;
  sys->totface++;
}

static void laplacian_system_construct_end(LaplacianSystem *sys)
{
  int(*face)[3];
  int a, totvert = sys->totvert, totface = sys->totface;

  laplacian_begin_solve(sys, 0);

  sys->varea = MEM_callocN(sizeof(float) * totvert, "LaplacianSystemVarea");

  sys->edgehash = BLI_edgehash_new_ex(__func__, BLI_EDGEHASH_SIZE_GUESS_FROM_POLYS(sys->totface));
  for (a = 0, face = sys->faces; a < sys->totface; a++, face++) {
    laplacian_increase_edge_count(sys->edgehash, (*face)[0], (*face)[1]);
    laplacian_increase_edge_count(sys->edgehash, (*face)[1], (*face)[2]);
    laplacian_increase_edge_count(sys->edgehash, (*face)[2], (*face)[0]);
  }

  if (sys->areaweights) {
    for (a = 0, face = sys->faces; a < sys->totface; a++, face++) {
      laplacian_triangle_area(sys, (*face)[0], (*face)[1], (*face)[2]);
    }
  }

  for (a = 0; a < totvert; a++) {
    if (sys->areaweights) {
      if (sys->varea[a] != 0.0f) {
        sys->varea[a] = 0.5f / sys->varea[a];
      }
    }
    else {
      sys->varea[a] = 1.0f;
    }

    /* for heat weighting */
    if (sys->heat.H) {
      EIG_linear_solver_matrix_add(sys->context, a, a, sys->heat.H[a]);
    }
  }

  if (sys->storeweights) {
    sys->fweights = MEM_callocN(sizeof(float) * 3 * totface, "LaplacianFWeight");
  }

  for (a = 0, face = sys->faces; a < totface; a++, face++) {
    laplacian_triangle_weights(sys, a, (*face)[0], (*face)[1], (*face)[2]);
  }

  MEM_freeN(sys->faces);
  sys->faces = NULL;

  if (sys->varea) {
    MEM_freeN(sys->varea);
    sys->varea = NULL;
  }

  BLI_edgehash_free(sys->edgehash, NULL);
  sys->edgehash = NULL;
}

static void laplacian_system_delete(LaplacianSystem *sys)
{
  if (sys->verts) {
    MEM_freeN(sys->verts);
  }
  if (sys->varea) {
    MEM_freeN(sys->varea);
  }
  if (sys->vpinned) {
    MEM_freeN(sys->vpinned);
  }
  if (sys->faces) {
    MEM_freeN(sys->faces);
  }
  if (sys->fweights) {
    MEM_freeN(sys->fweights);
  }

  EIG_linear_solver_delete(sys->context);
  MEM_freeN(sys);
}

void laplacian_begin_solve(LaplacianSystem *sys, int index)
{
  int a;

  if (!sys->variablesdone) {
    if (index >= 0) {
      for (a = 0; a < sys->totvert; a++) {
        if (sys->vpinned[a]) {
          EIG_linear_solver_variable_set(sys->context, 0, a, sys->verts[a][index]);
          EIG_linear_solver_variable_lock(sys->context, a);
        }
      }
    }

    sys->variablesdone = true;
  }
}

void laplacian_add_right_hand_side(LaplacianSystem *sys, int v, float value)
{
  EIG_linear_solver_right_hand_side_add(sys->context, 0, v, value);
}

int laplacian_system_solve(LaplacianSystem *sys)
{
  sys->variablesdone = false;

  // EIG_linear_solver_print_matrix(sys->context, );

  return EIG_linear_solver_solve(sys->context);
}

float laplacian_system_get_solution(LaplacianSystem *sys, int v)
{
  return EIG_linear_solver_variable_get(sys->context, 0, v);
}

/************************* Heat Bone Weighting ******************************/
/* From "Automatic Rigging and Animation of 3D Characters"
 * Ilya Baran and Jovan Popovic, SIGGRAPH 2007 */

#define C_WEIGHT 1.0f
#define WEIGHT_LIMIT_START 0.05f
#define WEIGHT_LIMIT_END 0.025f
#define DISTANCE_EPSILON 1e-4f

typedef struct BVHCallbackUserData {
  float start[3];
  float vec[3];
  LaplacianSystem *sys;
} BVHCallbackUserData;

static void bvh_callback(void *userdata, int index, const BVHTreeRay *ray, BVHTreeRayHit *hit)
{
  BVHCallbackUserData *data = (struct BVHCallbackUserData *)userdata;
  const MLoopTri *lt = &data->sys->heat.mlooptri[index];
  const MLoop *mloop = data->sys->heat.mloop;
  float(*verts)[3] = data->sys->heat.verts;
  const float *vtri_co[3];
  float dist_test;

  vtri_co[0] = verts[mloop[lt->tri[0]].v];
  vtri_co[1] = verts[mloop[lt->tri[1]].v];
  vtri_co[2] = verts[mloop[lt->tri[2]].v];

#ifdef USE_KDOPBVH_WATERTIGHT
  if (isect_ray_tri_watertight_v3(
          data->start, ray->isect_precalc, UNPACK3(vtri_co), &dist_test, NULL))
#else
  UNUSED_VARS(ray);
  if (isect_ray_tri_v3(data->start, data->vec, UNPACK3(vtri_co), &dist_test, NULL))
#endif
  {
    if (dist_test < hit->dist) {
      float n[3];
      normal_tri_v3(n, UNPACK3(vtri_co));
      if (dot_v3v3(n, data->vec) < -1e-5f) {
        hit->index = index;
        hit->dist = dist_test;
      }
    }
  }
}

/* Raytracing for vertex to bone/vertex visibility */
static void heat_ray_tree_create(LaplacianSystem *sys)
{
  const MLoopTri *looptri = sys->heat.mlooptri;
  const MLoop *mloop = sys->heat.mloop;
  float(*verts)[3] = sys->heat.verts;
  int tottri = sys->heat.tottri;
  int totvert = sys->heat.totvert;
  int a;

  sys->heat.bvhtree = BLI_bvhtree_new(tottri, 0.0f, 4, 6);
  sys->heat.vltree = MEM_callocN(sizeof(MLoopTri *) * totvert, "HeatVFaces");

  for (a = 0; a < tottri; a++) {
    const MLoopTri *lt = &looptri[a];
    float bb[6];
    int vtri[3];

    vtri[0] = mloop[lt->tri[0]].v;
    vtri[1] = mloop[lt->tri[1]].v;
    vtri[2] = mloop[lt->tri[2]].v;

    INIT_MINMAX(bb, bb + 3);
    minmax_v3v3_v3(bb, bb + 3, verts[vtri[0]]);
    minmax_v3v3_v3(bb, bb + 3, verts[vtri[1]]);
    minmax_v3v3_v3(bb, bb + 3, verts[vtri[2]]);

    BLI_bvhtree_insert(sys->heat.bvhtree, a, bb, 2);

    // Setup inverse pointers to use on isect.orig
    sys->heat.vltree[vtri[0]] = lt;
    sys->heat.vltree[vtri[1]] = lt;
    sys->heat.vltree[vtri[2]] = lt;
  }

  BLI_bvhtree_balance(sys->heat.bvhtree);
}

static int heat_ray_source_visible(LaplacianSystem *sys, int vertex, int source)
{
  BVHTreeRayHit hit;
  BVHCallbackUserData data;
  const MLoopTri *lt;
  float end[3];
  int visible;

  lt = sys->heat.vltree[vertex];
  if (lt == NULL) {
    return 1;
  }

  data.sys = sys;
  copy_v3_v3(data.start, sys->heat.verts[vertex]);

  closest_to_line_segment_v3(end, data.start, sys->heat.root[source], sys->heat.tip[source]);

  sub_v3_v3v3(data.vec, end, data.start);
  madd_v3_v3v3fl(data.start, data.start, data.vec, 1e-5);
  mul_v3_fl(data.vec, 1.0f - 2e-5f);

  /* pass normalized vec + distance to bvh */
  hit.index = -1;
  hit.dist = normalize_v3(data.vec);

  visible =
      BLI_bvhtree_ray_cast(
          sys->heat.bvhtree, data.start, data.vec, 0.0f, &hit, bvh_callback, (void *)&data) == -1;

  return visible;
}

static float heat_source_distance(LaplacianSystem *sys, int vertex, int source)
{
  float closest[3], d[3], dist, cosine;

  /* compute euclidian distance */
  closest_to_line_segment_v3(
      closest, sys->heat.verts[vertex], sys->heat.root[source], sys->heat.tip[source]);

  sub_v3_v3v3(d, sys->heat.verts[vertex], closest);
  dist = normalize_v3(d);

  /* if the vertex normal does not point along the bone, increase distance */
  cosine = dot_v3v3(d, sys->heat.vnors[vertex]);

  return dist / (0.5f * (cosine + 1.001f));
}

static int heat_source_closest(LaplacianSystem *sys, int vertex, int source)
{
  float dist;

  dist = heat_source_distance(sys, vertex, source);

  if (dist <= sys->heat.mindist[vertex] * (1.0f + DISTANCE_EPSILON)) {
    if (heat_ray_source_visible(sys, vertex, source)) {
      return 1;
    }
  }

  return 0;
}

static void heat_set_H(LaplacianSystem *sys, int vertex)
{
  float dist, mindist, h;
  int j, numclosest = 0;

  mindist = 1e10;

  /* compute minimum distance */
  for (j = 0; j < sys->heat.numsource; j++) {
    dist = heat_source_distance(sys, vertex, j);

    if (dist < mindist) {
      mindist = dist;
    }
  }

  sys->heat.mindist[vertex] = mindist;

  /* count number of sources with approximately this minimum distance */
  for (j = 0; j < sys->heat.numsource; j++) {
    if (heat_source_closest(sys, vertex, j)) {
      numclosest++;
    }
  }

  sys->heat.p[vertex] = (numclosest > 0) ? 1.0f / numclosest : 0.0f;

  /* compute H entry */
  if (numclosest > 0) {
    mindist = max_ff(mindist, 1e-4f);
    h = numclosest * C_WEIGHT / (mindist * mindist);
  }
  else {
    h = 0.0f;
  }

  sys->heat.H[vertex] = h;
}

static void heat_calc_vnormals(LaplacianSystem *sys)
{
  float fnor[3];
  int a, v1, v2, v3, (*face)[3];

  sys->heat.vnors = MEM_callocN(sizeof(float) * 3 * sys->totvert, "HeatVNors");

  for (a = 0, face = sys->faces; a < sys->totface; a++, face++) {
    v1 = (*face)[0];
    v2 = (*face)[1];
    v3 = (*face)[2];

    normal_tri_v3(fnor, sys->verts[v1], sys->verts[v2], sys->verts[v3]);

    add_v3_v3(sys->heat.vnors[v1], fnor);
    add_v3_v3(sys->heat.vnors[v2], fnor);
    add_v3_v3(sys->heat.vnors[v3], fnor);
  }

  for (a = 0; a < sys->totvert; a++) {
    normalize_v3(sys->heat.vnors[a]);
  }
}

static void heat_laplacian_create(LaplacianSystem *sys)
{
  const MLoopTri *mlooptri = sys->heat.mlooptri, *lt;
  const MLoop *mloop = sys->heat.mloop;
  int tottri = sys->heat.tottri;
  int totvert = sys->heat.totvert;
  int a;

  /* heat specific definitions */
  sys->heat.mindist = MEM_callocN(sizeof(float) * totvert, "HeatMinDist");
  sys->heat.H = MEM_callocN(sizeof(float) * totvert, "HeatH");
  sys->heat.p = MEM_callocN(sizeof(float) * totvert, "HeatP");

  /* add verts and faces to laplacian */
  for (a = 0; a < totvert; a++) {
    laplacian_add_vertex(sys, sys->heat.verts[a], 0);
  }

  for (a = 0, lt = mlooptri; a < tottri; a++, lt++) {
    int vtri[3];
    vtri[0] = mloop[lt->tri[0]].v;
    vtri[1] = mloop[lt->tri[1]].v;
    vtri[2] = mloop[lt->tri[2]].v;
    laplacian_add_triangle(sys, UNPACK3(vtri));
  }

  /* for distance computation in set_H */
  heat_calc_vnormals(sys);

  for (a = 0; a < totvert; a++) {
    heat_set_H(sys, a);
  }
}

static void heat_system_free(LaplacianSystem *sys)
{
  BLI_bvhtree_free(sys->heat.bvhtree);
  MEM_freeN((void *)sys->heat.vltree);
  MEM_freeN((void *)sys->heat.mlooptri);

  MEM_freeN(sys->heat.mindist);
  MEM_freeN(sys->heat.H);
  MEM_freeN(sys->heat.p);
  MEM_freeN(sys->heat.vnors);
}

static float heat_limit_weight(float weight)
{
  float t;

  if (weight < WEIGHT_LIMIT_END) {
    return 0.0f;
  }
  if (weight < WEIGHT_LIMIT_START) {
    t = (weight - WEIGHT_LIMIT_END) / (WEIGHT_LIMIT_START - WEIGHT_LIMIT_END);
    return t * WEIGHT_LIMIT_START;
  }
  return weight;
}

void heat_bone_weighting(Object *ob,
                         Mesh *me,
                         float (*verts)[3],
                         int numsource,
                         bDeformGroup **dgrouplist,
                         bDeformGroup **dgroupflip,
                         float (*root)[3],
                         float (*tip)[3],
                         int *selected,
                         const char **err_str)
{
  LaplacianSystem *sys;
  MLoopTri *mlooptri;
  MPoly *mp;
  MLoop *ml;
  float solution, weight;
  int *vertsflipped = NULL, *mask = NULL;
  int a, tottri, j, bbone, firstsegment, lastsegment;
  bool use_topology = (me->editflag & ME_EDIT_MIRROR_TOPO) != 0;

  MVert *mvert = me->mvert;
  bool use_vert_sel = (me->editflag & ME_EDIT_PAINT_VERT_SEL) != 0;
  bool use_face_sel = (me->editflag & ME_EDIT_PAINT_FACE_SEL) != 0;

  *err_str = NULL;

  /* bone heat needs triangulated faces */
  tottri = poly_to_tri_count(me->totpoly, me->totloop);

  /* count triangles and create mask */
  if (ob->mode & OB_MODE_WEIGHT_PAINT && (use_face_sel || use_vert_sel)) {
    mask = MEM_callocN(sizeof(int) * me->totvert, "heat_bone_weighting mask");

    /*  (added selectedVerts content for vertex mask, they used to just equal 1) */
    if (use_vert_sel) {
      for (a = 0, mp = me->mpoly; a < me->totpoly; mp++, a++) {
        for (j = 0, ml = me->mloop + mp->loopstart; j < mp->totloop; j++, ml++) {
          mask[ml->v] = (mvert[ml->v].flag & SELECT) != 0;
        }
      }
    }
    else if (use_face_sel) {
      for (a = 0, mp = me->mpoly; a < me->totpoly; mp++, a++) {
        if (mp->flag & ME_FACE_SEL) {
          for (j = 0, ml = me->mloop + mp->loopstart; j < mp->totloop; j++, ml++) {
            mask[ml->v] = 1;
          }
        }
      }
    }
  }

  /* create laplacian */
  sys = laplacian_system_construct_begin(me->totvert, tottri, 1);

  sys->heat.tottri = poly_to_tri_count(me->totpoly, me->totloop);
  mlooptri = MEM_mallocN(sizeof(*sys->heat.mlooptri) * sys->heat.tottri, __func__);

  BKE_mesh_recalc_looptri(me->mloop, me->mpoly, me->mvert, me->totloop, me->totpoly, mlooptri);

  sys->heat.mlooptri = mlooptri;
  sys->heat.mloop = me->mloop;
  sys->heat.totvert = me->totvert;
  sys->heat.verts = verts;
  sys->heat.root = root;
  sys->heat.tip = tip;
  sys->heat.numsource = numsource;

  heat_ray_tree_create(sys);
  heat_laplacian_create(sys);

  laplacian_system_construct_end(sys);

  if (dgroupflip) {
    vertsflipped = MEM_callocN(sizeof(int) * me->totvert, "vertsflipped");
    for (a = 0; a < me->totvert; a++) {
      vertsflipped[a] = mesh_get_x_mirror_vert(ob, NULL, a, use_topology);
    }
  }

  /* compute weights per bone */
  for (j = 0; j < numsource; j++) {
    if (!selected[j]) {
      continue;
    }

    firstsegment = (j == 0 || dgrouplist[j - 1] != dgrouplist[j]);
    lastsegment = (j == numsource - 1 || dgrouplist[j] != dgrouplist[j + 1]);
    bbone = !(firstsegment && lastsegment);

    /* clear weights */
    if (bbone && firstsegment) {
      for (a = 0; a < me->totvert; a++) {
        if (mask && !mask[a]) {
          continue;
        }

        ED_vgroup_vert_remove(ob, dgrouplist[j], a);
        if (vertsflipped && dgroupflip[j] && vertsflipped[a] >= 0) {
          ED_vgroup_vert_remove(ob, dgroupflip[j], vertsflipped[a]);
        }
      }
    }

    /* fill right hand side */
    laplacian_begin_solve(sys, -1);

    for (a = 0; a < me->totvert; a++) {
      if (heat_source_closest(sys, a, j)) {
        laplacian_add_right_hand_side(sys, a, sys->heat.H[a] * sys->heat.p[a]);
      }
    }

    /* solve */
    if (laplacian_system_solve(sys)) {
      /* load solution into vertex groups */
      for (a = 0; a < me->totvert; a++) {
        if (mask && !mask[a]) {
          continue;
        }

        solution = laplacian_system_get_solution(sys, a);

        if (bbone) {
          if (solution > 0.0f) {
            ED_vgroup_vert_add(ob, dgrouplist[j], a, solution, WEIGHT_ADD);
          }
        }
        else {
          weight = heat_limit_weight(solution);
          if (weight > 0.0f) {
            ED_vgroup_vert_add(ob, dgrouplist[j], a, weight, WEIGHT_REPLACE);
          }
          else {
            ED_vgroup_vert_remove(ob, dgrouplist[j], a);
          }
        }

        /* do same for mirror */
        if (vertsflipped && dgroupflip[j] && vertsflipped[a] >= 0) {
          if (bbone) {
            if (solution > 0.0f) {
              ED_vgroup_vert_add(ob, dgroupflip[j], vertsflipped[a], solution, WEIGHT_ADD);
            }
          }
          else {
            weight = heat_limit_weight(solution);
            if (weight > 0.0f) {
              ED_vgroup_vert_add(ob, dgroupflip[j], vertsflipped[a], weight, WEIGHT_REPLACE);
            }
            else {
              ED_vgroup_vert_remove(ob, dgroupflip[j], vertsflipped[a]);
            }
          }
        }
      }
    }
    else if (*err_str == NULL) {
      *err_str = N_("Bone Heat Weighting: failed to find solution for one or more bones");
      break;
    }

    /* remove too small vertex weights */
    if (bbone && lastsegment) {
      for (a = 0; a < me->totvert; a++) {
        if (mask && !mask[a]) {
          continue;
        }

        weight = ED_vgroup_vert_weight(ob, dgrouplist[j], a);
        weight = heat_limit_weight(weight);
        if (weight <= 0.0f) {
          ED_vgroup_vert_remove(ob, dgrouplist[j], a);
        }

        if (vertsflipped && dgroupflip[j] && vertsflipped[a] >= 0) {
          weight = ED_vgroup_vert_weight(ob, dgroupflip[j], vertsflipped[a]);
          weight = heat_limit_weight(weight);
          if (weight <= 0.0f) {
            ED_vgroup_vert_remove(ob, dgroupflip[j], vertsflipped[a]);
          }
        }
      }
    }
  }

  /* free */
  if (vertsflipped) {
    MEM_freeN(vertsflipped);
  }
  if (mask) {
    MEM_freeN(mask);
  }

  heat_system_free(sys);

  laplacian_system_delete(sys);
}

/************************** Harmonic Coordinates ****************************/
/* From "Harmonic Coordinates for Character Articulation",
 * Pushkar Joshi, Mark Meyer, Tony DeRose, Brian Green and Tom Sanocki,
 * SIGGRAPH 2007. */

#define EPSILON 0.0001f

#define MESHDEFORM_TAG_UNTYPED 0
#define MESHDEFORM_TAG_BOUNDARY 1
#define MESHDEFORM_TAG_INTERIOR 2
#define MESHDEFORM_TAG_EXTERIOR 3

/** minimum length for #MDefBoundIsect.len */
#define MESHDEFORM_LEN_THRESHOLD 1e-6f

#define MESHDEFORM_MIN_INFLUENCE 0.0005f

static const int MESHDEFORM_OFFSET[7][3] = {
    {0, 0, 0},
    {1, 0, 0},
    {-1, 0, 0},
    {0, 1, 0},
    {0, -1, 0},
    {0, 0, 1},
    {0, 0, -1},
};

typedef struct MDefBoundIsect {
  /* intersection on the cage 'cagecos' */
  float co[3];
  /* non-facing intersections are considered interior */
  bool facing;
  /* ray-cast index aligned with MPoly (ray-hit-triangle isn't needed) */
  int poly_index;
  /* distance from 'co' to the ray-cast start (clamped to avoid zero division) */
  float len;
  /* weights aligned with the MPoly's loop indices */
  float poly_weights[0];
} MDefBoundIsect;

typedef struct MDefBindInfluence {
  struct MDefBindInfluence *next;
  float weight;
  int vertex;
} MDefBindInfluence;

typedef struct MeshDeformBind {
  /* grid dimensions */
  float min[3], max[3];
  float width[3], halfwidth[3];
  int size, size3;

  /* meshes */
  Mesh *cagemesh;
  float (*cagecos)[3];
  float (*vertexcos)[3];
  int totvert, totcagevert;

  /* grids */
  MemArena *memarena;
  MDefBoundIsect *(*boundisect)[6];
  int *semibound;
  int *tag;
  float *phi, *totalphi;

  /* mesh stuff */
  int *inside;
  float *weights;
  MDefBindInfluence **dyngrid;
  float cagemat[4][4];

  /* direct solver */
  int *varidx;

  BVHTree *bvhtree;
  BVHTreeFromMesh bvhdata;

  /* avoid DM function calls during intersections */
  struct {
    const MPoly *mpoly;
    const MLoop *mloop;
    const MLoopTri *looptri;
    const float (*poly_nors)[3];
  } cagemesh_cache;
} MeshDeformBind;

typedef struct MeshDeformIsect {
  float start[3];
  float vec[3];
  float vec_length;
  float lambda;

  bool isect;
  float u, v;

} MeshDeformIsect;

/* ray intersection */

struct MeshRayCallbackData {
  MeshDeformBind *mdb;
  MeshDeformIsect *isec;
};

static void harmonic_ray_callback(void *userdata,
                                  int index,
                                  const BVHTreeRay *ray,
                                  BVHTreeRayHit *hit)
{
  struct MeshRayCallbackData *data = userdata;
  MeshDeformBind *mdb = data->mdb;
  const MLoop *mloop = mdb->cagemesh_cache.mloop;
  const MLoopTri *looptri = mdb->cagemesh_cache.looptri, *lt;
  const float(*poly_nors)[3] = mdb->cagemesh_cache.poly_nors;
  MeshDeformIsect *isec = data->isec;
  float no[3], co[3], dist;
  float *face[3];

  lt = &looptri[index];

  face[0] = mdb->cagecos[mloop[lt->tri[0]].v];
  face[1] = mdb->cagecos[mloop[lt->tri[1]].v];
  face[2] = mdb->cagecos[mloop[lt->tri[2]].v];

  bool isect_ray_tri = isect_ray_tri_watertight_v3(
      ray->origin, ray->isect_precalc, UNPACK3(face), &dist, NULL);

  if (!isect_ray_tri || dist > isec->vec_length) {
    return;
  }

  if (poly_nors) {
    copy_v3_v3(no, poly_nors[lt->poly]);
  }
  else {
    normal_tri_v3(no, UNPACK3(face));
  }

  madd_v3_v3v3fl(co, ray->origin, ray->direction, dist);
  dist /= isec->vec_length;
  if (dist < hit->dist) {
    hit->index = index;
    hit->dist = dist;
    copy_v3_v3(hit->co, co);

    isec->isect = (dot_v3v3(no, ray->direction) <= 0.0f);
    isec->lambda = dist;
  }
}

static MDefBoundIsect *meshdeform_ray_tree_intersect(MeshDeformBind *mdb,
                                                     const float co1[3],
                                                     const float co2[3])
{
  BVHTreeRayHit hit;
  MeshDeformIsect isect_mdef;
  struct MeshRayCallbackData data = {
      mdb,
      &isect_mdef,
  };
  float end[3], vec_normal[3];

  /* happens binding when a cage has no faces */
  if (UNLIKELY(mdb->bvhtree == NULL)) {
    return NULL;
  }

  /* setup isec */
  memset(&isect_mdef, 0, sizeof(isect_mdef));
  isect_mdef.lambda = 1e10f;

  copy_v3_v3(isect_mdef.start, co1);
  copy_v3_v3(end, co2);
  sub_v3_v3v3(isect_mdef.vec, end, isect_mdef.start);
  isect_mdef.vec_length = normalize_v3_v3(vec_normal, isect_mdef.vec);

  hit.index = -1;
  hit.dist = BVH_RAYCAST_DIST_MAX;
  if (BLI_bvhtree_ray_cast_ex(mdb->bvhtree,
                              isect_mdef.start,
                              vec_normal,
                              0.0,
                              &hit,
                              harmonic_ray_callback,
                              &data,
                              BVH_RAYCAST_WATERTIGHT) != -1) {
    const MLoop *mloop = mdb->cagemesh_cache.mloop;
    const MLoopTri *lt = &mdb->cagemesh_cache.looptri[hit.index];
    const MPoly *mp = &mdb->cagemesh_cache.mpoly[lt->poly];
    const float(*cagecos)[3] = mdb->cagecos;
    const float len = isect_mdef.lambda;
    MDefBoundIsect *isect;

    float(*mp_cagecos)[3] = BLI_array_alloca(mp_cagecos, mp->totloop);
    int i;

    /* create MDefBoundIsect, and extra for 'poly_weights[]' */
    isect = BLI_memarena_alloc(mdb->memarena, sizeof(*isect) + (sizeof(float) * mp->totloop));

    /* compute intersection coordinate */
    madd_v3_v3v3fl(isect->co, co1, isect_mdef.vec, len);

    isect->facing = isect_mdef.isect;

    isect->poly_index = lt->poly;

    isect->len = max_ff(len_v3v3(co1, isect->co), MESHDEFORM_LEN_THRESHOLD);

    /* compute mean value coordinates for interpolation */
    for (i = 0; i < mp->totloop; i++) {
      copy_v3_v3(mp_cagecos[i], cagecos[mloop[mp->loopstart + i].v]);
    }

    interp_weights_poly_v3(isect->poly_weights, mp_cagecos, mp->totloop, isect->co);

    return isect;
  }

  return NULL;
}

static int meshdeform_inside_cage(MeshDeformBind *mdb, float *co)
{
  MDefBoundIsect *isect;
  float outside[3], start[3], dir[3];
  int i;

  for (i = 1; i <= 6; i++) {
    outside[0] = co[0] + (mdb->max[0] - mdb->min[0] + 1.0f) * MESHDEFORM_OFFSET[i][0];
    outside[1] = co[1] + (mdb->max[1] - mdb->min[1] + 1.0f) * MESHDEFORM_OFFSET[i][1];
    outside[2] = co[2] + (mdb->max[2] - mdb->min[2] + 1.0f) * MESHDEFORM_OFFSET[i][2];

    copy_v3_v3(start, co);
    sub_v3_v3v3(dir, outside, start);
    normalize_v3(dir);

    isect = meshdeform_ray_tree_intersect(mdb, start, outside);
    if (isect && !isect->facing) {
      return 1;
    }
  }

  return 0;
}

/* solving */

BLI_INLINE int meshdeform_index(MeshDeformBind *mdb, int x, int y, int z, int n)
{
  int size = mdb->size;

  x += MESHDEFORM_OFFSET[n][0];
  y += MESHDEFORM_OFFSET[n][1];
  z += MESHDEFORM_OFFSET[n][2];

  if (x < 0 || x >= mdb->size) {
    return -1;
  }
  if (y < 0 || y >= mdb->size) {
    return -1;
  }
  if (z < 0 || z >= mdb->size) {
    return -1;
  }

  return x + y * size + z * size * size;
}

BLI_INLINE void meshdeform_cell_center(
    MeshDeformBind *mdb, int x, int y, int z, int n, float *center)
{
  x += MESHDEFORM_OFFSET[n][0];
  y += MESHDEFORM_OFFSET[n][1];
  z += MESHDEFORM_OFFSET[n][2];

  center[0] = mdb->min[0] + x * mdb->width[0] + mdb->halfwidth[0];
  center[1] = mdb->min[1] + y * mdb->width[1] + mdb->halfwidth[1];
  center[2] = mdb->min[2] + z * mdb->width[2] + mdb->halfwidth[2];
}

static void meshdeform_add_intersections(MeshDeformBind *mdb, int x, int y, int z)
{
  MDefBoundIsect *isect;
  float center[3], ncenter[3];
  int i, a;

  a = meshdeform_index(mdb, x, y, z, 0);
  meshdeform_cell_center(mdb, x, y, z, 0, center);

  /* check each outgoing edge for intersection */
  for (i = 1; i <= 6; i++) {
    if (meshdeform_index(mdb, x, y, z, i) == -1) {
      continue;
    }

    meshdeform_cell_center(mdb, x, y, z, i, ncenter);

    isect = meshdeform_ray_tree_intersect(mdb, center, ncenter);
    if (isect) {
      mdb->boundisect[a][i - 1] = isect;
      mdb->tag[a] = MESHDEFORM_TAG_BOUNDARY;
    }
  }
}

static void meshdeform_bind_floodfill(MeshDeformBind *mdb)
{
  int *stack, *tag = mdb->tag;
  int a, b, i, xyz[3], stacksize, size = mdb->size;

  stack = MEM_callocN(sizeof(int) * mdb->size3, "MeshDeformBindStack");

  /* we know lower left corner is EXTERIOR because of padding */
  tag[0] = MESHDEFORM_TAG_EXTERIOR;
  stack[0] = 0;
  stacksize = 1;

  /* floodfill exterior tag */
  while (stacksize > 0) {
    a = stack[--stacksize];

    xyz[2] = a / (size * size);
    xyz[1] = (a - xyz[2] * size * size) / size;
    xyz[0] = a - xyz[1] * size - xyz[2] * size * size;

    for (i = 1; i <= 6; i++) {
      b = meshdeform_index(mdb, xyz[0], xyz[1], xyz[2], i);

      if (b != -1) {
        if (tag[b] == MESHDEFORM_TAG_UNTYPED ||
            (tag[b] == MESHDEFORM_TAG_BOUNDARY && !mdb->boundisect[a][i - 1])) {
          tag[b] = MESHDEFORM_TAG_EXTERIOR;
          stack[stacksize++] = b;
        }
      }
    }
  }

  /* other cells are interior */
  for (a = 0; a < size * size * size; a++) {
    if (tag[a] == MESHDEFORM_TAG_UNTYPED) {
      tag[a] = MESHDEFORM_TAG_INTERIOR;
    }
  }

#if 0
  {
    int tb, ti, te, ts;
    tb = ti = te = ts = 0;
    for (a = 0; a < size * size * size; a++) {
      if (tag[a] == MESHDEFORM_TAG_BOUNDARY) {
        tb++;
      }
      else if (tag[a] == MESHDEFORM_TAG_INTERIOR) {
        ti++;
      }
      else if (tag[a] == MESHDEFORM_TAG_EXTERIOR) {
        te++;

        if (mdb->semibound[a]) {
          ts++;
        }
      }
    }

    printf("interior %d exterior %d boundary %d semi-boundary %d\n", ti, te, tb, ts);
  }
#endif

  MEM_freeN(stack);
}

static float meshdeform_boundary_phi(const MeshDeformBind *mdb,
                                     const MDefBoundIsect *isect,
                                     int cagevert)
{
  const MLoop *mloop = mdb->cagemesh_cache.mloop;
  const MPoly *mp = &mdb->cagemesh_cache.mpoly[isect->poly_index];
  int i;

  for (i = 0; i < mp->totloop; i++) {
    if (mloop[mp->loopstart + i].v == cagevert) {
      return isect->poly_weights[i];
    }
  }

  return 0.0f;
}

static float meshdeform_interp_w(MeshDeformBind *mdb,
                                 float *gridvec,
                                 float *UNUSED(vec),
                                 int UNUSED(cagevert))
{
  float dvec[3], ivec[3], wx, wy, wz, result = 0.0f;
  float weight, totweight = 0.0f;
  int i, a, x, y, z;

  for (i = 0; i < 3; i++) {
    ivec[i] = (int)gridvec[i];
    dvec[i] = gridvec[i] - ivec[i];
  }

  for (i = 0; i < 8; i++) {
    if (i & 1) {
      x = ivec[0] + 1;
      wx = dvec[0];
    }
    else {
      x = ivec[0];
      wx = 1.0f - dvec[0];
    }

    if (i & 2) {
      y = ivec[1] + 1;
      wy = dvec[1];
    }
    else {
      y = ivec[1];
      wy = 1.0f - dvec[1];
    }

    if (i & 4) {
      z = ivec[2] + 1;
      wz = dvec[2];
    }
    else {
      z = ivec[2];
      wz = 1.0f - dvec[2];
    }

    CLAMP(x, 0, mdb->size - 1);
    CLAMP(y, 0, mdb->size - 1);
    CLAMP(z, 0, mdb->size - 1);

    a = meshdeform_index(mdb, x, y, z, 0);
    weight = wx * wy * wz;
    result += weight * mdb->phi[a];
    totweight += weight;
  }

  if (totweight > 0.0f) {
    result /= totweight;
  }

  return result;
}

static void meshdeform_check_semibound(MeshDeformBind *mdb, int x, int y, int z)
{
  int i, a;

  a = meshdeform_index(mdb, x, y, z, 0);
  if (mdb->tag[a] != MESHDEFORM_TAG_EXTERIOR) {
    return;
  }

  for (i = 1; i <= 6; i++) {
    if (mdb->boundisect[a][i - 1]) {
      mdb->semibound[a] = 1;
    }
  }
}

static float meshdeform_boundary_total_weight(MeshDeformBind *mdb, int x, int y, int z)
{
  float weight, totweight = 0.0f;
  int i, a;

  a = meshdeform_index(mdb, x, y, z, 0);

  /* count weight for neighbor cells */
  for (i = 1; i <= 6; i++) {
    if (meshdeform_index(mdb, x, y, z, i) == -1) {
      continue;
    }

    if (mdb->boundisect[a][i - 1]) {
      weight = 1.0f / mdb->boundisect[a][i - 1]->len;
    }
    else if (!mdb->semibound[a]) {
      weight = 1.0f / mdb->width[0];
    }
    else {
      weight = 0.0f;
    }

    totweight += weight;
  }

  return totweight;
}

static void meshdeform_matrix_add_cell(
    MeshDeformBind *mdb, LinearSolver *context, int x, int y, int z)
{
  MDefBoundIsect *isect;
  float weight, totweight;
  int i, a, acenter;

  acenter = meshdeform_index(mdb, x, y, z, 0);
  if (mdb->tag[acenter] == MESHDEFORM_TAG_EXTERIOR) {
    return;
  }

  EIG_linear_solver_matrix_add(context, mdb->varidx[acenter], mdb->varidx[acenter], 1.0f);

  totweight = meshdeform_boundary_total_weight(mdb, x, y, z);
  for (i = 1; i <= 6; i++) {
    a = meshdeform_index(mdb, x, y, z, i);
    if (a == -1 || mdb->tag[a] == MESHDEFORM_TAG_EXTERIOR) {
      continue;
    }

    isect = mdb->boundisect[acenter][i - 1];
    if (!isect) {
      weight = (1.0f / mdb->width[0]) / totweight;
      EIG_linear_solver_matrix_add(context, mdb->varidx[acenter], mdb->varidx[a], -weight);
    }
  }
}

static void meshdeform_matrix_add_rhs(
    MeshDeformBind *mdb, LinearSolver *context, int x, int y, int z, int cagevert)
{
  MDefBoundIsect *isect;
  float rhs, weight, totweight;
  int i, a, acenter;

  acenter = meshdeform_index(mdb, x, y, z, 0);
  if (mdb->tag[acenter] == MESHDEFORM_TAG_EXTERIOR) {
    return;
  }

  totweight = meshdeform_boundary_total_weight(mdb, x, y, z);
  for (i = 1; i <= 6; i++) {
    a = meshdeform_index(mdb, x, y, z, i);
    if (a == -1) {
      continue;
    }

    isect = mdb->boundisect[acenter][i - 1];

    if (isect) {
      weight = (1.0f / isect->len) / totweight;
      rhs = weight * meshdeform_boundary_phi(mdb, isect, cagevert);
      EIG_linear_solver_right_hand_side_add(context, 0, mdb->varidx[acenter], rhs);
    }
  }
}

static void meshdeform_matrix_add_semibound_phi(
    MeshDeformBind *mdb, int x, int y, int z, int cagevert)
{
  MDefBoundIsect *isect;
  float rhs, weight, totweight;
  int i, a;

  a = meshdeform_index(mdb, x, y, z, 0);
  if (!mdb->semibound[a]) {
    return;
  }

  mdb->phi[a] = 0.0f;

  totweight = meshdeform_boundary_total_weight(mdb, x, y, z);
  for (i = 1; i <= 6; i++) {
    isect = mdb->boundisect[a][i - 1];

    if (isect) {
      weight = (1.0f / isect->len) / totweight;
      rhs = weight * meshdeform_boundary_phi(mdb, isect, cagevert);
      mdb->phi[a] += rhs;
    }
  }
}

static void meshdeform_matrix_add_exterior_phi(
    MeshDeformBind *mdb, int x, int y, int z, int UNUSED(cagevert))
{
  float phi, totweight;
  int i, a, acenter;

  acenter = meshdeform_index(mdb, x, y, z, 0);
  if (mdb->tag[acenter] != MESHDEFORM_TAG_EXTERIOR || mdb->semibound[acenter]) {
    return;
  }

  phi = 0.0f;
  totweight = 0.0f;
  for (i = 1; i <= 6; i++) {
    a = meshdeform_index(mdb, x, y, z, i);

    if (a != -1 && mdb->semibound[a]) {
      phi += mdb->phi[a];
      totweight += 1.0f;
    }
  }

  if (totweight != 0.0f) {
    mdb->phi[acenter] = phi / totweight;
  }
}

static void meshdeform_matrix_solve(MeshDeformModifierData *mmd, MeshDeformBind *mdb)
{
  LinearSolver *context;
  float vec[3], gridvec[3];
  int a, b, x, y, z, totvar;
  char message[256];

  /* setup variable indices */
  mdb->varidx = MEM_callocN(sizeof(int) * mdb->size3, "MeshDeformDSvaridx");
  for (a = 0, totvar = 0; a < mdb->size3; a++) {
    mdb->varidx[a] = (mdb->tag[a] == MESHDEFORM_TAG_EXTERIOR) ? -1 : totvar++;
  }

  if (totvar == 0) {
    MEM_freeN(mdb->varidx);
    return;
  }

  progress_bar(0, "Starting mesh deform solve");

  /* setup linear solver */
  context = EIG_linear_solver_new(totvar, totvar, 1);

  /* build matrix */
  for (z = 0; z < mdb->size; z++) {
    for (y = 0; y < mdb->size; y++) {
      for (x = 0; x < mdb->size; x++) {
        meshdeform_matrix_add_cell(mdb, context, x, y, z);
      }
    }
  }

  /* solve for each cage vert */
  for (a = 0; a < mdb->totcagevert; a++) {
    /* fill in right hand side and solve */
    for (z = 0; z < mdb->size; z++) {
      for (y = 0; y < mdb->size; y++) {
        for (x = 0; x < mdb->size; x++) {
          meshdeform_matrix_add_rhs(mdb, context, x, y, z, a);
        }
      }
    }

    if (EIG_linear_solver_solve(context)) {
      for (z = 0; z < mdb->size; z++) {
        for (y = 0; y < mdb->size; y++) {
          for (x = 0; x < mdb->size; x++) {
            meshdeform_matrix_add_semibound_phi(mdb, x, y, z, a);
          }
        }
      }

      for (z = 0; z < mdb->size; z++) {
        for (y = 0; y < mdb->size; y++) {
          for (x = 0; x < mdb->size; x++) {
            meshdeform_matrix_add_exterior_phi(mdb, x, y, z, a);
          }
        }
      }

      for (b = 0; b < mdb->size3; b++) {
        if (mdb->tag[b] != MESHDEFORM_TAG_EXTERIOR) {
          mdb->phi[b] = EIG_linear_solver_variable_get(context, 0, mdb->varidx[b]);
        }
        mdb->totalphi[b] += mdb->phi[b];
      }

      if (mdb->weights) {
        /* static bind : compute weights for each vertex */
        for (b = 0; b < mdb->totvert; b++) {
          if (mdb->inside[b]) {
            copy_v3_v3(vec, mdb->vertexcos[b]);
            gridvec[0] = (vec[0] - mdb->min[0] - mdb->halfwidth[0]) / mdb->width[0];
            gridvec[1] = (vec[1] - mdb->min[1] - mdb->halfwidth[1]) / mdb->width[1];
            gridvec[2] = (vec[2] - mdb->min[2] - mdb->halfwidth[2]) / mdb->width[2];

            mdb->weights[b * mdb->totcagevert + a] = meshdeform_interp_w(mdb, gridvec, vec, a);
          }
        }
      }
      else {
        MDefBindInfluence *inf;

        /* dynamic bind */
        for (b = 0; b < mdb->size3; b++) {
          if (mdb->phi[b] >= MESHDEFORM_MIN_INFLUENCE) {
            inf = BLI_memarena_alloc(mdb->memarena, sizeof(*inf));
            inf->vertex = a;
            inf->weight = mdb->phi[b];
            inf->next = mdb->dyngrid[b];
            mdb->dyngrid[b] = inf;
          }
        }
      }
    }
    else {
      BKE_modifier_set_error(&mmd->modifier, "Failed to find bind solution (increase precision?)");
      error("Mesh Deform: failed to find bind solution.");
      break;
    }

    BLI_snprintf(
        message, sizeof(message), "Mesh deform solve %d / %d       |||", a + 1, mdb->totcagevert);
    progress_bar((float)(a + 1) / (float)(mdb->totcagevert), message);
  }

#if 0
  /* sanity check */
  for (b = 0; b < mdb->size3; b++) {
    if (mdb->tag[b] != MESHDEFORM_TAG_EXTERIOR) {
      if (fabsf(mdb->totalphi[b] - 1.0f) > 1e-4f) {
        printf("totalphi deficiency [%s|%d] %d: %.10f\n",
               (mdb->tag[b] == MESHDEFORM_TAG_INTERIOR) ? "interior" : "boundary",
               mdb->semibound[b],
               mdb->varidx[b],
               mdb->totalphi[b]);
      }
    }
  }
#endif

  /* free */
  MEM_freeN(mdb->varidx);

  EIG_linear_solver_delete(context);
}

static void harmonic_coordinates_bind(MeshDeformModifierData *mmd, MeshDeformBind *mdb)
{
  MDefBindInfluence *inf;
  MDefInfluence *mdinf;
  MDefCell *cell;
  float center[3], vec[3], maxwidth, totweight;
  int a, b, x, y, z, totinside, offset;

  /* compute bounding box of the cage mesh */
  INIT_MINMAX(mdb->min, mdb->max);

  for (a = 0; a < mdb->totcagevert; a++) {
    minmax_v3v3_v3(mdb->min, mdb->max, mdb->cagecos[a]);
  }

  /* allocate memory */
  mdb->size = (2 << (mmd->gridsize - 1)) + 2;
  mdb->size3 = mdb->size * mdb->size * mdb->size;
  mdb->tag = MEM_callocN(sizeof(int) * mdb->size3, "MeshDeformBindTag");
  mdb->phi = MEM_callocN(sizeof(float) * mdb->size3, "MeshDeformBindPhi");
  mdb->totalphi = MEM_callocN(sizeof(float) * mdb->size3, "MeshDeformBindTotalPhi");
  mdb->boundisect = MEM_callocN(sizeof(*mdb->boundisect) * mdb->size3, "MDefBoundIsect");
  mdb->semibound = MEM_callocN(sizeof(int) * mdb->size3, "MDefSemiBound");
  mdb->bvhtree = BKE_bvhtree_from_mesh_get(&mdb->bvhdata, mdb->cagemesh, BVHTREE_FROM_LOOPTRI, 4);
  mdb->inside = MEM_callocN(sizeof(int) * mdb->totvert, "MDefInside");

  if (mmd->flag & MOD_MDEF_DYNAMIC_BIND) {
    mdb->dyngrid = MEM_callocN(sizeof(MDefBindInfluence *) * mdb->size3, "MDefDynGrid");
  }
  else {
    mdb->weights = MEM_callocN(sizeof(float) * mdb->totvert * mdb->totcagevert, "MDefWeights");
  }

  mdb->memarena = BLI_memarena_new(BLI_MEMARENA_STD_BUFSIZE, "harmonic coords arena");
  BLI_memarena_use_calloc(mdb->memarena);

  /* initialize data from 'cagedm' for reuse */
  {
    Mesh *me = mdb->cagemesh;
    mdb->cagemesh_cache.mpoly = me->mpoly;
    mdb->cagemesh_cache.mloop = me->mloop;
    mdb->cagemesh_cache.looptri = BKE_mesh_runtime_looptri_ensure(me);
    /* can be NULL */
    mdb->cagemesh_cache.poly_nors = CustomData_get_layer(&me->pdata, CD_NORMAL);
  }

  /* make bounding box equal size in all directions, add padding, and compute
   * width of the cells */
  maxwidth = -1.0f;
  for (a = 0; a < 3; a++) {
    if (mdb->max[a] - mdb->min[a] > maxwidth) {
      maxwidth = mdb->max[a] - mdb->min[a];
    }
  }

  for (a = 0; a < 3; a++) {
    center[a] = (mdb->min[a] + mdb->max[a]) * 0.5f;
    mdb->min[a] = center[a] - maxwidth * 0.5f;
    mdb->max[a] = center[a] + maxwidth * 0.5f;

    mdb->width[a] = (mdb->max[a] - mdb->min[a]) / (mdb->size - 4);
    mdb->min[a] -= 2.1f * mdb->width[a];
    mdb->max[a] += 2.1f * mdb->width[a];

    mdb->width[a] = (mdb->max[a] - mdb->min[a]) / mdb->size;
    mdb->halfwidth[a] = mdb->width[a] * 0.5f;
  }

  progress_bar(0, "Setting up mesh deform system");

  totinside = 0;
  for (a = 0; a < mdb->totvert; a++) {
    copy_v3_v3(vec, mdb->vertexcos[a]);
    mdb->inside[a] = meshdeform_inside_cage(mdb, vec);
    if (mdb->inside[a]) {
      totinside++;
    }
  }

  /* free temporary MDefBoundIsects */
  BLI_memarena_free(mdb->memarena);
  mdb->memarena = BLI_memarena_new(BLI_MEMARENA_STD_BUFSIZE, "harmonic coords arena");

  /* start with all cells untyped */
  for (a = 0; a < mdb->size3; a++) {
    mdb->tag[a] = MESHDEFORM_TAG_UNTYPED;
  }

  /* detect intersections and tag boundary cells */
  for (z = 0; z < mdb->size; z++) {
    for (y = 0; y < mdb->size; y++) {
      for (x = 0; x < mdb->size; x++) {
        meshdeform_add_intersections(mdb, x, y, z);
      }
    }
  }

  /* compute exterior and interior tags */
  meshdeform_bind_floodfill(mdb);

  for (z = 0; z < mdb->size; z++) {
    for (y = 0; y < mdb->size; y++) {
      for (x = 0; x < mdb->size; x++) {
        meshdeform_check_semibound(mdb, x, y, z);
      }
    }
  }

  /* solve */
  meshdeform_matrix_solve(mmd, mdb);

  /* assign results */
  if (mmd->flag & MOD_MDEF_DYNAMIC_BIND) {
    mmd->totinfluence = 0;
    for (a = 0; a < mdb->size3; a++) {
      for (inf = mdb->dyngrid[a]; inf; inf = inf->next) {
        mmd->totinfluence++;
      }
    }

    /* convert MDefBindInfluences to smaller MDefInfluences */
    mmd->dyngrid = MEM_callocN(sizeof(MDefCell) * mdb->size3, "MDefDynGrid");
    mmd->dyninfluences = MEM_callocN(sizeof(MDefInfluence) * mmd->totinfluence, "MDefInfluence");
    offset = 0;
    for (a = 0; a < mdb->size3; a++) {
      cell = &mmd->dyngrid[a];
      cell->offset = offset;

      totweight = 0.0f;
      mdinf = mmd->dyninfluences + cell->offset;
      for (inf = mdb->dyngrid[a]; inf; inf = inf->next, mdinf++) {
        mdinf->weight = inf->weight;
        mdinf->vertex = inf->vertex;
        totweight += mdinf->weight;
        cell->totinfluence++;
      }

      if (totweight > 0.0f) {
        mdinf = mmd->dyninfluences + cell->offset;
        for (b = 0; b < cell->totinfluence; b++, mdinf++) {
          mdinf->weight /= totweight;
        }
      }

      offset += cell->totinfluence;
    }

    mmd->dynverts = mdb->inside;
    mmd->dyngridsize = mdb->size;
    copy_v3_v3(mmd->dyncellmin, mdb->min);
    mmd->dyncellwidth = mdb->width[0];
    MEM_freeN(mdb->dyngrid);
  }
  else {
    mmd->bindweights = mdb->weights;
    MEM_freeN(mdb->inside);
  }

  MEM_freeN(mdb->tag);
  MEM_freeN(mdb->phi);
  MEM_freeN(mdb->totalphi);
  MEM_freeN(mdb->boundisect);
  MEM_freeN(mdb->semibound);
  BLI_memarena_free(mdb->memarena);
  free_bvhtree_from_mesh(&mdb->bvhdata);
}

void ED_mesh_deform_bind_callback(MeshDeformModifierData *mmd,
                                  Mesh *cagemesh,
                                  float *vertexcos,
                                  int totvert,
                                  float cagemat[4][4])
{
  MeshDeformModifierData *mmd_orig = (MeshDeformModifierData *)BKE_modifier_get_original(
      &mmd->modifier);
  MeshDeformBind mdb;
  MVert *mvert;
  int a;

  waitcursor(1);
  start_progress_bar();

  memset(&mdb, 0, sizeof(MeshDeformBind));

  /* get mesh and cage mesh */
  mdb.vertexcos = MEM_callocN(sizeof(float) * 3 * totvert, "MeshDeformCos");
  mdb.totvert = totvert;

  mdb.cagemesh = cagemesh;
  mdb.totcagevert = mdb.cagemesh->totvert;
  mdb.cagecos = MEM_callocN(sizeof(*mdb.cagecos) * mdb.totcagevert, "MeshDeformBindCos");
  copy_m4_m4(mdb.cagemat, cagemat);

  mvert = mdb.cagemesh->mvert;
  for (a = 0; a < mdb.totcagevert; a++) {
    copy_v3_v3(mdb.cagecos[a], mvert[a].co);
  }
  for (a = 0; a < mdb.totvert; a++) {
    mul_v3_m4v3(mdb.vertexcos[a], mdb.cagemat, vertexcos + a * 3);
  }

  /* solve */
  harmonic_coordinates_bind(mmd_orig, &mdb);

  /* assign bind variables */
  mmd_orig->bindcagecos = (float *)mdb.cagecos;
  mmd_orig->totvert = mdb.totvert;
  mmd_orig->totcagevert = mdb.totcagevert;
  copy_m4_m4(mmd_orig->bindmat, mmd_orig->object->obmat);

  /* transform bindcagecos to world space */
  for (a = 0; a < mdb.totcagevert; a++) {
    mul_m4_v3(mmd_orig->object->obmat, mmd_orig->bindcagecos + a * 3);
  }

  /* free */
  MEM_freeN(mdb.vertexcos);

  /* compact weights */
  BKE_modifier_mdef_compact_influences((ModifierData *)mmd_orig);

  end_progress_bar();
  waitcursor(0);
}