Modernize "C" includes in mert.

This is one of those little chores in managing a long-lived C++
project: standard C headers like stdio.h and math.h now have their own
place in the C++ standard as resp. cstdio, cmath, and so on.  In this
branch the #include names are updated for the mert/ subdirectory; more
branches to follow.

C++11 adds cstdint, but to support compilation with the previous
standard, that change is left for later.

7 files changed, 14 insertions, 14 deletions

diff --git a/mert/TER/alignmentStruct.h b/mert/TER/alignmentStruct.h
index f593d560b..379af9382 100644
--- a/mert/TER/alignmentStruct.h
+++ b/mert/TER/alignmentStruct.h
@@ -23,7 +23,7 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 
 
 #include <vector>
-#include <stdio.h>
+#include <cstdio>
 #include <string>
 #include <sstream>
 #include "tools.h"
@@ -64,4 +64,4 @@ public:
 };
 
 }
-#endif
\ No newline at end of file
+#endif
diff --git a/mert/TER/bestShiftStruct.h b/mert/TER/bestShiftStruct.h
index a0f7f1493..85b65979b 100644
--- a/mert/TER/bestShiftStruct.h
+++ b/mert/TER/bestShiftStruct.h
@@ -23,7 +23,7 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 
 
 #include <vector>
-#include <stdio.h>
+#include <cstdio>
 #include <string>
 #include <sstream>
 #include "tools.h"
diff --git a/mert/TER/infosHasher.h b/mert/TER/infosHasher.h
index e441bfe33..b824d18eb 100644
--- a/mert/TER/infosHasher.h
+++ b/mert/TER/infosHasher.h
@@ -22,7 +22,7 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 #define __INFOSHASHER_H__
 #include <string>
 // #include <ext/hash_map>
-#include <stdio.h>
+#include <cstdio>
 #include <iostream>
 #include <sstream>
 #include <vector>
@@ -51,4 +51,4 @@ public:
 
 
 }
-#endif
\ No newline at end of file
+#endif
diff --git a/mert/TER/terAlignment.h b/mert/TER/terAlignment.h
index afa89d7ac..0e98c8f9a 100644
--- a/mert/TER/terAlignment.h
+++ b/mert/TER/terAlignment.h
@@ -23,8 +23,8 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 
 
 #include <vector>
-#include <stdio.h>
-#include <string.h>
+#include <cstdio>
+#include <cstring>
 #include "tools.h"
 #include "terShift.h"
 
@@ -74,4 +74,4 @@ public:
 };
 
 }
-#endif
\ No newline at end of file
+#endif
diff --git a/mert/TER/terShift.h b/mert/TER/terShift.h
index cd8bcf693..1f9746e60 100644
--- a/mert/TER/terShift.h
+++ b/mert/TER/terShift.h
@@ -23,7 +23,7 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 
 
 #include <vector>
-#include <stdio.h>
+#include <cstdio>
 #include <string>
 #include <sstream>
 #include "tools.h"
@@ -65,4 +65,4 @@ public:
 };
 
 }
-#endif
\ No newline at end of file
+#endif
diff --git a/mert/TER/tercalc.h b/mert/TER/tercalc.h
index e2a7ae044..24fb10c4c 100644
--- a/mert/TER/tercalc.h
+++ b/mert/TER/tercalc.h
@@ -22,8 +22,8 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 #define _TERCPPTERCALC_H___
 
 #include <vector>
-#include <stdio.h>
-#include <string.h>
+#include <cstdio>
+#include <cstring>
 #include <sstream>
 #include "hashMap.h"
 #include "hashMapInfos.h"
diff --git a/mert/TER/tools.h b/mert/TER/tools.h
index 29fc11674..20a0cf6b0 100644
--- a/mert/TER/tools.h
+++ b/mert/TER/tools.h
@@ -24,8 +24,8 @@ Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
 
 #include <vector>
 #include <iostream>
-#include <stdio.h>
-#include <stdlib.h>
+#include <cstdio>
+#include <cstdlib>
 #include <string>
 #include <sstream>
 #include <boost/xpressive/xpressive.hpp>