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|
#!/usr/bin/perl -w
# $Id$
# Usage:
# mert-moses.pl <foreign> <english> <decoder-executable> <decoder-config>
# For other options see below or run 'mert-moses.pl --help'
# Notes:
# <foreign> and <english> should be raw text files, one sentence per line
# <english> can be a prefix, in which case the files are <english>0, <english>1, etc. are used
# Revision history
# 5 Aug 2009 Handling with different reference length policies (shortest, average, closest) for BLEU
# and case-sensistive/insensitive evaluation (Nicola Bertoldi)
# 5 Jun 2008 Forked previous version to support new mert implementation.
# 13 Feb 2007 Better handling of default values for lambda, now works with multiple
# models and lexicalized reordering
# 11 Oct 2006 Handle different input types through parameter --inputype=[0|1]
# (0 for text, 1 for confusion network, default is 0) (Nicola Bertoldi)
# 10 Oct 2006 Allow skip of filtering of phrase tables (--no-filter-phrase-table)
# useful if binary phrase tables are used (Nicola Bertoldi)
# 28 Aug 2006 Use either closest or average or shortest (default) reference
# length as effective reference length
# Use either normalization or not (default) of texts (Nicola Bertoldi)
# 31 Jul 2006 move gzip run*.out to avoid failure wit restartings
# adding default paths
# 29 Jul 2006 run-filter, score-nbest and mert run on the queue (Nicola; Ondrej had to type it in again)
# 28 Jul 2006 attempt at foolproof usage, strong checking of input validity, merged the parallel and nonparallel version (Ondrej Bojar)
# 27 Jul 2006 adding the safesystem() function to handle with process failure
# 22 Jul 2006 fixed a bug about handling relative path of configuration file (Nicola Bertoldi)
# 21 Jul 2006 adapted for Moses-in-parallel (Nicola Bertoldi)
# 18 Jul 2006 adapted for Moses and cleaned up (PK)
# 21 Jan 2005 unified various versions, thorough cleanup (DWC)
# now indexing accumulated n-best list solely by feature vectors
# 14 Dec 2004 reimplemented find_threshold_points in C (NMD)
# 25 Oct 2004 Use either average or shortest (default) reference
# length as effective reference length (DWC)
# 13 Oct 2004 Use alternative decoders (DWC)
# Original version by Philipp Koehn
use FindBin qw($Bin);
use File::Basename;
my $SCRIPTS_ROOTDIR = $Bin;
$SCRIPTS_ROOTDIR =~ s/\/training$//;
$SCRIPTS_ROOTDIR = $ENV{"SCRIPTS_ROOTDIR"} if defined($ENV{"SCRIPTS_ROOTDIR"});
# for each _d_istortion, _l_anguage _m_odel, _t_ranslation _m_odel and _w_ord penalty, there is a list
# of [ default value, lower bound, upper bound ]-triples. In most cases, only one triple is used,
# but the translation model has currently 5 features
# defaults for initial values and ranges are:
my $default_triples = {
# these basic models exist even if not specified, they are
# not associated with any model file
"w" => [ [ 0.0, -1.0, 1.0 ] ], # word penalty
};
my $additional_triples = {
# if the more lambda parameters for the weights are needed
# (due to additional tables) use the following values for them
"d" => [ [ 1.0, 0.0, 2.0 ] ], # lexicalized reordering model
"lm" => [ [ 1.0, 0.0, 2.0 ] ], # language model
"g" => [ [ 1.0, 0.0, 2.0 ], # generation model
[ 1.0, 0.0, 2.0 ] ],
"tm" => [ [ 0.3, 0.0, 0.5 ], # translation model
[ 0.2, 0.0, 0.5 ],
[ 0.3, 0.0, 0.5 ],
[ 0.2, 0.0, 0.5 ],
[ 0.0,-1.0, 1.0 ] ], # ... last weight is phrase penalty
"lex"=> [ [ 0.1, 0.0, 0.2 ] ], # global lexical model
"I" => [ [ 0.0,-1.0, 1.0 ] ], # input lattice scores
};
# the following models (given by shortname) use same triplet
# for any number of lambdas, the number of the lambdas is determined
# by the ini file
my $additional_tripes_loop = { map { ($_, 1) } qw/ d I / };
# moses.ini file uses FULL names for lambdas, while this training script internally (and on the command line)
# uses ABBR names.
my $ABBR_FULL_MAP = "d=weight-d lm=weight-l tm=weight-t w=weight-w g=weight-generation lex=weight-lex I=weight-i";
my %ABBR2FULL = map {split/=/,$_,2} split /\s+/, $ABBR_FULL_MAP;
my %FULL2ABBR = map {my ($a, $b) = split/=/,$_,2; ($b, $a);} split /\s+/, $ABBR_FULL_MAP;
# We parse moses.ini to figure out how many weights do we need to optimize.
# For this, we must know the correspondence between options defining files
# for models and options assigning weights to these models.
my $TABLECONFIG_ABBR_MAP = "ttable-file=tm lmodel-file=lm distortion-file=d generation-file=g global-lexical-file=lex link-param-count=I";
my %TABLECONFIG2ABBR = map {split(/=/,$_,2)} split /\s+/, $TABLECONFIG_ABBR_MAP;
# There are weights that do not correspond to any input file, they just increase the total number of lambdas we optimize
#my $extra_lambdas_for_model = {
# "w" => 1, # word penalty
# "d" => 1, # basic distortion
#};
my $minimum_required_change_in_weights = 0.00001;
# stop if no lambda changes more than this
my $verbose = 0;
my $usage = 0; # request for --help
my $___WORKING_DIR = "mert-work";
my $___DEV_F = undef; # required, input text to decode
my $___DEV_E = undef; # required, basename of files with references
my $___DECODER = undef; # required, pathname to the decoder executable
my $___CONFIG = undef; # required, pathname to startup ini file
my $___N_BEST_LIST_SIZE = 100;
my $queue_flags = "-hard"; # extra parameters for parallelizer
# the -l ws0ssmt is relevant only to JHU workshop
my $___JOBS = undef; # if parallel, number of jobs to use (undef or 0 -> serial)
my $___DECODER_FLAGS = ""; # additional parametrs to pass to the decoder
my $___LAMBDA = undef; # string specifying the seed weights and boundaries of all lambdas
my $continue = 0; # should we try to continue from the last saved step?
my $skip_decoder = 0; # and should we skip the first decoder run (assuming we got interrupted during mert)
my $___FILTER_PHRASE_TABLE = 1; # filter phrase table
my $___PREDICTABLE_SEEDS = 0;
# Parameter for effective reference length when computing BLEU score
# Default is to use shortest reference
# Use "--shortest" to use shortest reference length
# Use "--average" to use average reference length
# Use "--closest" to use closest reference length
# Only one between --shortest, --average and --closest can be set
# If more than one choice the defualt (--shortest) is used
my $___SHORTEST = 0;
my $___AVERAGE = 0;
my $___CLOSEST = 0;
# Use "--nocase" to compute case-insensitive scores
my $___NOCASE = 0;
# Use "--nonorm" to non normalize translation before computing scores
my $___NONORM = 0;
# set 0 if input type is text, set 1 if input type is confusion network
my $___INPUTTYPE = 0;
my $mertdir = undef; # path to new mert directory
my $mertargs = undef; # args to pass through to mert
my $filtercmd = undef; # path to filter-model-given-input.pl
my $filterfile = undef;
my $qsubwrapper = undef;
my $moses_parallel_cmd = undef;
my $old_sge = 0; # assume sge<6.0
my $___CONFIG_BAK = undef; # backup pathname to startup ini file
my $efficient_scorenbest_flag = undef; # set to 1 to activate a time-efficient scoring of nbest lists
# (this method is more memory-consumptive)
my $___ACTIVATE_FEATURES = undef; # comma-separated (or blank-separated) list of features to work on
# if undef work on all features
# (others are fixed to the starting values)
my $prev_aggregate_nbl_size = -1; # number of previous step to consider when loading data (default =-1)
# -1 means all previous, i.e. from iteration 1
# 0 means no previous data, i.e. from actual iteration
# 1 means 1 previous data , i.e. from the actual iteration and from the previous one
# and so on
my $starting_weights_from_ini = 1;
my $maximum_iterations = 25;
use strict;
use Getopt::Long;
GetOptions(
"working-dir=s" => \$___WORKING_DIR,
"input=s" => \$___DEV_F,
"inputtype=i" => \$___INPUTTYPE,
"refs=s" => \$___DEV_E,
"decoder=s" => \$___DECODER,
"config=s" => \$___CONFIG,
"nbest=i" => \$___N_BEST_LIST_SIZE,
"queue-flags=s" => \$queue_flags,
"jobs=i" => \$___JOBS,
"decoder-flags=s" => \$___DECODER_FLAGS,
"lambdas=s" => \$___LAMBDA,
"continue" => \$continue,
"skip-decoder" => \$skip_decoder,
"shortest" => \$___SHORTEST,
"average" => \$___AVERAGE,
"closest" => \$___CLOSEST,
"nocase" => \$___NOCASE,
"nonorm" => \$___NONORM,
"help" => \$usage,
"verbose" => \$verbose,
"mertdir=s" => \$mertdir,
"mertargs=s" => \$mertargs,
"rootdir=s" => \$SCRIPTS_ROOTDIR,
"filtercmd=s" => \$filtercmd, # allow to override the default location
"filterfile=s" => \$filterfile, # input to filtering script (useful for lattices/confnets)
"qsubwrapper=s" => \$qsubwrapper, # allow to override the default location
"mosesparallelcmd=s" => \$moses_parallel_cmd, # allow to override the default location
"old-sge" => \$old_sge, #passed to moses-parallel
"filter-phrase-table!" => \$___FILTER_PHRASE_TABLE, # allow (disallow)filtering of phrase tables
"predictable-seeds" => \$___PREDICTABLE_SEEDS, # allow (disallow) switch on/off reseeding of random restarts
"efficient_scorenbest_flag" => \$efficient_scorenbest_flag, # activate a time-efficient scoring of nbest lists
"activate-features=s" => \$___ACTIVATE_FEATURES, #comma-separated (or blank-separated) list of features to work on (others are fixed to the starting values)
"prev-aggregate-nbestlist=i" => \$prev_aggregate_nbl_size, #number of previous step to consider when loading data (default =-1, i.e. all previous)
"maximum-iterations=i" => \$maximum_iterations,
"starting-weights-from-ini!" => \$starting_weights_from_ini,
) or exit(1);
# the 4 required parameters can be supplied on the command line directly
# or using the --options
if (scalar @ARGV == 4) {
# required parameters: input_file references_basename decoder_executable
$___DEV_F = shift;
$___DEV_E = shift;
$___DECODER = shift;
$___CONFIG = shift;
}
if ($usage || !defined $___DEV_F || !defined $___DEV_E || !defined $___DECODER || !defined $___CONFIG) {
print STDERR "usage: mert-moses.pl input-text references decoder-executable decoder.ini
Options:
--working-dir=mert-dir ... where all the files are created
--nbest=100 ... how big nbestlist to generate
--jobs=N ... set this to anything to run moses in parallel
--mosesparallelcmd=STR ... use a different script instead of moses-parallel
--queue-flags=STRING ... anything you with to pass to qsub, eg.
'-l ws06osssmt=true'. The default is: '-hard'
To reset the parameters, please use
--queue-flags=' '
(i.e. a space between the quotes).
--decoder-flags=STRING ... extra parameters for the decoder
--lambdas=STRING ... default values and ranges for lambdas, a
complex string such as
'd:1,0.5-1.5 lm:1,0.5-1.5 tm:0.3,0.25-0.75;0.2,0.25-0.75;0.2,0.25-0.75;0.3,0.25-0.75;0,-0.5-0.5 w:0,-0.5-0.5'
--allow-unknown-lambda ... keep going even if someone supplies a new
lambda in the lambdas option (such as
'superbmodel:1,0-1'); optimize it, too
--continue ... continue from the last successful iteration
--skip-decoder ... skip the decoder run for the first time,
assuming that we got interrupted during
optimization
--shortest --average --closest
... Use shortest/average/closest reference length
as effective reference length (mutually exclusive)
--nocase ... Do not preserve case information; i.e.
case-insensitive evaluation (default is false).
--nonorm ... Do not use text normalization (flag is not active,
i.e. text is NOT normalized)
--filtercmd=STRING ... path to filter-model-given-input.pl
--filterfile=STRING ... path to alternative to input-text for filtering
model. useful for lattice decoding
--rootdir=STRING ... where do helpers reside (if not given explicitly)
--mertdir=STRING ... path to new mert implementation
--mertargs=STRING ... extra args for mert, eg. to specify scorer
--scorenbestcmd=STRING ... path to score-nbest.py
--old-sge ... passed to parallelizers, assume Grid Engine < 6.0
--inputtype=[0|1|2] ... Handle different input types: (0 for text,
1 for confusion network, 2 for lattices,
default is 0)
--no-filter-phrase-table ... disallow filtering of phrase tables
(useful if binary phrase tables are available)
--predictable-seeds ... provide predictable seeds to mert so that random
restarts are the same on every run
--efficient_scorenbest_flag ... time-efficient scoring of nbest lists
(this method is more memory-consumptive)
--activate-features=STRING ... comma-separated list of features to optimize,
others are fixed to the starting values
default: optimize all features
example: tm_0,tm_4,d_0
--prev-aggregate-nbestlist=INT ... number of previous step to consider when
loading data (default = $prev_aggregate_nbl_size)
-1 means all previous, i.e. from iteration 1
0 means no previous data, i.e. only the
current iteration
N means this and N previous iterations
--maximum-iterations=ITERS ... Maximum number of iterations. Default: $maximum_iterations
--starting-weights-from-ini ... use the weights given in moses.ini file as
the starting weights (and also as the fixed
weights if --activate-features is used).
default: yes (used to be 'no')
";
exit 1;
}
# Check validity of input parameters and set defaults if needed
print STDERR "Using SCRIPTS_ROOTDIR: $SCRIPTS_ROOTDIR\n";
# path of script for filtering phrase tables and running the decoder
$filtercmd="$SCRIPTS_ROOTDIR/training/filter-model-given-input.pl" if !defined $filtercmd;
$qsubwrapper="$SCRIPTS_ROOTDIR/generic/qsub-wrapper.pl" if !defined $qsubwrapper;
$moses_parallel_cmd = "$SCRIPTS_ROOTDIR/generic/moses-parallel.pl"
if !defined $moses_parallel_cmd;
if (!defined $mertdir) {
$mertdir = "$SCRIPTS_ROOTDIR/../mert";
print STDERR "Assuming --mertdir=$mertdir\n";
}
my $mert_extract_cmd = "$mertdir/extractor";
my $mert_mert_cmd = "$mertdir/mert";
die "Not executable: $mert_extract_cmd" if ! -x $mert_extract_cmd;
die "Not executable: $mert_mert_cmd" if ! -x $mert_mert_cmd;
$mertargs = "" if !defined $mertargs;
my $scconfig = undef;
if ($mertargs =~ /\-\-scconfig\s+(.+?)(\s|$)/){
$scconfig=$1;
$scconfig =~ s/\,/ /g;
$mertargs =~ s/\-\-scconfig\s+(.+?)(\s|$)//;
}
# handling reference lengh strategy
if (($___CLOSEST + $___AVERAGE + $___SHORTEST) > 1){
die "You can specify just ONE reference length strategy (closest or shortest or average) not both\n";
}
if ($___SHORTEST){
$scconfig .= " reflen:shortest";
}elsif ($___AVERAGE){
$scconfig .= " reflen:average";
}elsif ($___CLOSEST){
$scconfig .= " reflen:closest";
}
# handling case-insensitive flag
if ($___NOCASE) {
$scconfig .= " case:false";
}else{
$scconfig .= " case:true";
}
$scconfig =~ s/^\s+//;
$scconfig =~ s/\s+$//;
$scconfig =~ s/\s+/,/g;
$scconfig = "--scconfig $scconfig" if ($scconfig);
my $mert_extract_args=$mertargs;
$mert_extract_args .=" $scconfig";
my $mert_mert_args=$mertargs;
$mert_mert_args =~ s/\-+(binary|b)\b//;
$mert_mert_args .=" $scconfig";
if ($___ACTIVATE_FEATURES){ $mert_mert_args .=" -o \"$___ACTIVATE_FEATURES\""; }
my ($just_cmd_filtercmd,$x) = split(/ /,$filtercmd);
die "Not executable: $just_cmd_filtercmd" if ! -x $just_cmd_filtercmd;
die "Not executable: $moses_parallel_cmd" if defined $___JOBS && ! -x $moses_parallel_cmd;
die "Not executable: $qsubwrapper" if defined $___JOBS && ! -x $qsubwrapper;
die "Not executable: $___DECODER" if ! -x $___DECODER;
my $input_abs = ensure_full_path($___DEV_F);
die "File not found: $___DEV_F (interpreted as $input_abs)."
if ! -e $input_abs;
$___DEV_F = $input_abs;
# Option to pass to qsubwrapper and moses-parallel
my $pass_old_sge = $old_sge ? "-old-sge" : "";
my $decoder_abs = ensure_full_path($___DECODER);
die "File not found: $___DECODER (interpreted as $decoder_abs)."
if ! -x $decoder_abs;
$___DECODER = $decoder_abs;
my $ref_abs = ensure_full_path($___DEV_E);
# check if English dev set (reference translations) exist and store a list of all references
my @references;
if (-e $ref_abs) {
push @references, $ref_abs;
}
else {
# if multiple file, get a full list of the files
my $part = 0;
while (-e $ref_abs.$part) {
push @references, $ref_abs.$part;
$part++;
}
die("Reference translations not found: $___DEV_E (interpreted as $ref_abs)") unless $part;
}
my $config_abs = ensure_full_path($___CONFIG);
die "File not found: $___CONFIG (interpreted as $config_abs)."
if ! -e $config_abs;
$___CONFIG = $config_abs;
# check validity of moses.ini and collect number of models and lambdas per model
# need to make a copy of $extra_lambdas_for_model, scan_config spoils it
#my %copy_of_extra_lambdas_for_model = %$extra_lambdas_for_model;
my %used_triples = %{$default_triples};
my ($models_used) = scan_config($___CONFIG);
# Parse the lambda config string and convert it to a nice structure in the same format as $used_triples
if (defined $___LAMBDA) {
my %specified_triples;
# interpreting lambdas from command line
foreach (split(/\s+/,$___LAMBDA)) {
my ($name,$values) = split(/:/);
die "Malformed setting: '$_', expected name:values\n" if !defined $name || !defined $values;
foreach my $startminmax (split/;/,$values) {
if ($startminmax =~ /^(-?[\.\d]+),(-?[\.\d]+)-(-?[\.\d]+)$/) {
my $start = $1;
my $min = $2;
my $max = $3;
push @{$specified_triples{$name}}, [$start, $min, $max];
}
else {
die "Malformed feature range definition: $name => $startminmax\n";
}
}
}
# sanity checks for specified lambda triples
foreach my $name (keys %used_triples) {
die "No lambdas specified for '$name', but ".($#{$used_triples{$name}}+1)." needed.\n"
unless defined($specified_triples{$name});
die "Number of lambdas specified for '$name' (".($#{$specified_triples{$name}}+1).") does not match number needed (".($#{$used_triples{$name}}+1).")\n"
if (($#{$used_triples{$name}}) != ($#{$specified_triples{$name}}));
}
foreach my $name (keys %specified_triples) {
die "Lambdas specified for '$name' ".(@{$specified_triples{$name}}).", but none needed.\n"
unless defined($used_triples{$name});
}
%used_triples = %specified_triples;
}
# moses should use our config
if ($___DECODER_FLAGS =~ /(^|\s)-(config|f) /
|| $___DECODER_FLAGS =~ /(^|\s)-(ttable-file|t) /
|| $___DECODER_FLAGS =~ /(^|\s)-(distortion-file) /
|| $___DECODER_FLAGS =~ /(^|\s)-(generation-file) /
|| $___DECODER_FLAGS =~ /(^|\s)-(lmodel-file) /
|| $___DECODER_FLAGS =~ /(^|\s)-(global-lexical-file) /
) {
die "It is forbidden to supply any of -config, -ttable-file, -distortion-file, -generation-file or -lmodel-file in the --decoder-flags.\nPlease use only the --config option to give the config file that lists all the supplementary files.";
}
# as weights are normalized in the next steps (by cmert)
# normalize initial LAMBDAs, too
my $need_to_normalize = 1;
my @order_of_lambdas_from_decoder = ();
# this will store the labels of scores coming out of the decoder (and hence the order of lambdas coming out of mert)
# we will use the array to interpret the lambdas
# the array gets filled with labels only after first nbestlist was generated
#store current directory and create the working directory (if needed)
my $cwd = `pawd 2>/dev/null`;
if(!$cwd){$cwd = `pwd`;}
chomp($cwd);
safesystem("mkdir -p $___WORKING_DIR") or die "Can't mkdir $___WORKING_DIR";
{
# open local scope
#chdir to the working directory
chdir($___WORKING_DIR) or die "Can't chdir to $___WORKING_DIR";
# fixed file names
my $mert_outfile = "mert.out";
my $mert_logfile = "mert.log";
my $weights_in_file = "init.opt";
my $weights_out_file = "weights.txt";
# set start run
my $start_run = 1;
my $bestpoint = undef;
my $devbleu = undef;
my $prev_feature_file = undef;
my $prev_score_file = undef;
if ($continue) {
# getting the last finished step
print STDERR "Trying to continue an interrupted optimization.\n";
open IN, "finished_step.txt" or die "Failed to find the step number, failed to read finished_step.txt";
my $step = <IN>;
chomp $step;
close IN;
print STDERR "Last finished step is $step\n";
# getting the first needed step
my $firststep;
if ($prev_aggregate_nbl_size==-1){
$firststep=1;
}
else{
$firststep=$step-$prev_aggregate_nbl_size+1;
$firststep=($firststep>0)?$firststep:1;
}
#checking if all needed data are available
if ($firststep<=$step){
print STDERR "First previous needed data index is $firststep\n";
print STDERR "Checking whether all needed data (from step $firststep to step $step) are available\n";
for (my $prevstep=$firststep; $prevstep<=$step;$prevstep++){
print STDERR "Checking whether data of step $prevstep are available\n";
if (! -e "run$prevstep.features.dat"){
die "Can't start from step $step, because run$prevstep.features.dat was not found!";
}else{
if (defined $prev_feature_file){
$prev_feature_file = "${prev_feature_file},run$prevstep.features.dat";
}
else{
$prev_feature_file = "run$prevstep.features.dat";
}
}
if (! -e "run$prevstep.scores.dat"){
die "Can't start from step $step, because run$prevstep.scores.dat was not found!";
}else{
if (defined $prev_score_file){
$prev_score_file = "${prev_score_file},run$prevstep.scores.dat";
}
else{
$prev_score_file = "run$prevstep.scores.dat";
}
}
}
if (! -e "run$step.weights.txt"){
die "Can't start from step $step, because run$step.weights.txt was not found!";
}
if (! -e "run$step.$mert_logfile"){
die "Can't start from step $step, because run$step.$mert_logfile was not found!";
}
if (! -e "run$step.best$___N_BEST_LIST_SIZE.out.gz"){
die "Can't start from step $step, because run$step.best$___N_BEST_LIST_SIZE.out.gz was not found!";
}
print STDERR "All needed data are available\n";
print STDERR "Loading information from last step ($step)\n";
open(IN,"run$step.$mert_logfile") or die "Can't open run$step.$mert_logfile";
while (<IN>) {
if (/Best point:\s*([\s\d\.\-e]+?)\s*=> ([\-\d\.]+)/) {
$bestpoint = $1;
$devbleu = $2;
last;
}
}
close IN;
die "Failed to parse mert.log, missed Best point there."
if !defined $bestpoint || !defined $devbleu;
print "($step) BEST at $step $bestpoint => $devbleu at ".`date`;
my @newweights = split /\s+/, $bestpoint;
print STDERR "Reading last cached lambda values (result from step $step)\n";
@order_of_lambdas_from_decoder = get_order_of_scores_from_nbestlist("gunzip -c < run$step.best$___N_BEST_LIST_SIZE.out.gz |");
# update my cache of lambda values
store_new_lambda_values(\%used_triples, \@order_of_lambdas_from_decoder, \@newweights);
}
else{
print STDERR "No pevious data are needed\n";
}
$start_run = $step +1;
}
if ($___FILTER_PHRASE_TABLE){
# filter the phrase tables wih respect to input, use --decoder-flags
print "filtering the phrase tables... ".`date`;
my $___FILTER_F = $___DEV_F;
$___FILTER_F = $filterfile if (defined $filterfile);
my $cmd = "$filtercmd ./filtered $___CONFIG $___FILTER_F";
if (defined $___JOBS && $___JOBS > 0) {
safesystem("$qsubwrapper $pass_old_sge -command='$cmd' -queue-parameter=\"$queue_flags\" -stdout=filterphrases.out -stderr=filterphrases.err" )
or die "Failed to submit filtering of tables to the queue (via $qsubwrapper)";
} else {
safesystem($cmd) or die "Failed to filter the tables.";
}
# make a backup copy of startup ini file
$___CONFIG_BAK = $___CONFIG;
# the decoder should now use the filtered model
$___CONFIG = "filtered/moses.ini";
}
else{
# do not filter phrase tables (useful if binary phrase tables are available)
# use the original configuration file
$___CONFIG_BAK = $___CONFIG;
}
my $PARAMETERS;
#$PARAMETERS = $___DECODER_FLAGS . " -config $___CONFIG -inputtype $___INPUTTYPE";
$PARAMETERS = $___DECODER_FLAGS;
my $run=$start_run-1;
my $oldallsorted = undef;
my $allsorted = undef;
my $cmd;
# features and scores from the last run.
my $nbest_file=undef;
while(1) {
$run++;
if ($maximum_iterations && $run > $maximum_iterations) {
print "Maximum number of iterations exceeded - stopping\n";
last;
}
# run beamdecoder with option to output nbestlists
# the end result should be (1) @NBEST_LIST, a list of lists; (2) @SCORE, a list of lists of lists
print "run $run start at ".`date`;
# In case something dies later, we might wish to have a copy
create_config($___CONFIG, "./run$run.moses.ini", \%used_triples, $run, (defined$devbleu?$devbleu:"--not-estimated--"));
# skip if the user wanted
if (!$skip_decoder) {
print "($run) run decoder to produce n-best lists\n";
$nbest_file = run_decoder(\%used_triples, $PARAMETERS, $run, \@order_of_lambdas_from_decoder, $need_to_normalize);
$need_to_normalize = 0;
safesystem("gzip -f $nbest_file") or die "Failed to gzip run*out";
$nbest_file = $nbest_file.".gz";
}
else {
$nbest_file="run$run.best$___N_BEST_LIST_SIZE.out.gz";
print "skipped decoder run $run\n";
if (0 == scalar @order_of_lambdas_from_decoder) {
@order_of_lambdas_from_decoder = get_order_of_scores_from_nbestlist("gunzip -dc $nbest_file | head -1 |");
}
$skip_decoder = 0;
$need_to_normalize = 0;
}
# extract score statistics and features from the nbest lists
print STDERR "Scoring the nbestlist.\n";
my $base_feature_file = "features.dat";
my $base_score_file = "scores.dat";
my $feature_file = "run$run.${base_feature_file}";
my $score_file = "run$run.${base_score_file}";
$cmd = "$mert_extract_cmd $mert_extract_args --scfile $score_file --ffile $feature_file -r ".join(",", @references)." -n $nbest_file";
if (defined $___JOBS && $___JOBS > 0) {
safesystem("$qsubwrapper $pass_old_sge -command='$cmd' -queue-parameter=\"$queue_flags\" -stdout=extract.out -stderr=extract.err" )
or die "Failed to submit extraction to queue (via $qsubwrapper)";
} else {
safesystem("$cmd > extract.out 2> extract.err") or die "Failed to do extraction of statistics.";
}
# Create the initial weights file for mert, in init.opt
# mert reads in the file init.opt containing the current
# values of lambda.
# We need to prepare the files and **the order of the lambdas must
# correspond to the order @order_of_lambdas_from_decoder
my @MIN = (); # lower bounds
my @MAX = (); # upper bounds
my @CURR = (); # the starting values
my @NAME = (); # to which model does the lambda belong
my %visited = ();
foreach my $name (@order_of_lambdas_from_decoder) {
if (!defined $visited{$name}) {
$visited{$name} = 0;
} else {
$visited{$name}++;
}
my ($val, $min, $max) = @{$used_triples{$name}->[$visited{$name}]};
push @CURR, $val;
push @MIN, $min;
push @MAX, $max;
push @NAME, $name;
}
open(OUT,"> $weights_in_file") or die "Can't write $weights_in_file (WD now $___WORKING_DIR)";
print OUT join(" ", @CURR)."\n";
close(OUT);
print join(" ", @NAME)."\n";
# make a backup copy labelled with this run number
safesystem("\\cp -f $weights_in_file run$run.$weights_in_file") or die;
my $DIM = scalar(@CURR); # number of lambdas
# run mert
$cmd = "$mert_mert_cmd -d $DIM $mert_mert_args -n 20";
if ($___PREDICTABLE_SEEDS) {
my $seed = $run * 1000;
$cmd = $cmd." -r $seed";
}
if (defined $prev_feature_file) {
$cmd = $cmd." --ffile $prev_feature_file,$feature_file";
}
else{
$cmd = $cmd." --ffile $feature_file";
}
if (defined $prev_score_file) {
$cmd = $cmd." --scfile $prev_score_file,$score_file";
}
else{
$cmd = $cmd." --scfile $score_file";
}
$cmd = $cmd." --ifile run$run.$weights_in_file";
if (defined $___JOBS && $___JOBS > 0) {
safesystem("$qsubwrapper $pass_old_sge -command='$cmd' -stdout=$mert_outfile -stderr=$mert_logfile -queue-parameter=\"$queue_flags\"") or die "Failed to start mert (via qsubwrapper $qsubwrapper)";
} else {
safesystem("$cmd > $mert_outfile 2> $mert_logfile") or die "Failed to run mert";
}
die "Optimization failed, file $weights_out_file does not exist or is empty"
if ! -s $weights_out_file;
# backup copies
safesystem ("\\cp -f extract.err run$run.extract.err") or die;
safesystem ("\\cp -f extract.out run$run.extract.out") or die;
safesystem ("\\cp -f $mert_outfile run$run.$mert_outfile") or die;
safesystem ("\\cp -f $mert_logfile run$run.$mert_logfile") or die;
safesystem ("touch $mert_logfile run$run.$mert_logfile") or die;
safesystem ("\\cp -f $weights_out_file run$run.$weights_out_file") or die; # this one is needed for restarts, too
print "run $run end at ".`date`;
$bestpoint = undef;
$devbleu = undef;
open(IN,"run$run.$mert_logfile") or die "Can't open run$run.$mert_logfile";
while (<IN>) {
if (/Best point:\s*([\s\d\.\-e]+?)\s*=> ([\-\d\.]+)/) {
$bestpoint = $1;
$devbleu = $2;
last;
}
}
close IN;
die "Failed to parse mert.log, missed Best point there."
if !defined $bestpoint || !defined $devbleu;
print "($run) BEST at $run: $bestpoint => $devbleu at ".`date`;
my @newweights = split /\s+/, $bestpoint;
# update my cache of lambda values
store_new_lambda_values(\%used_triples, \@order_of_lambdas_from_decoder, \@newweights);
## additional stopping criterion: weights have not changed
my $shouldstop = 1;
for(my $i=0; $i<@CURR; $i++) {
die "Lost weight! mert reported fewer weights (@newweights) than we gave it (@CURR)"
if !defined $newweights[$i];
if (abs($CURR[$i] - $newweights[$i]) >= $minimum_required_change_in_weights) {
$shouldstop = 0;
last;
}
}
open F, "> finished_step.txt" or die "Can't mark finished step";
print F $run."\n";
close F;
if ($shouldstop) {
print STDERR "None of the weights changed more than $minimum_required_change_in_weights. Stopping.\n";
last;
}
my $firstrun;
if ($prev_aggregate_nbl_size==-1){
$firstrun=1;
}
else{
$firstrun=$run-$prev_aggregate_nbl_size+1;
$firstrun=($firstrun>0)?$firstrun:1;
}
print "loading data from $firstrun to $run (prev_aggregate_nbl_size=$prev_aggregate_nbl_size)\n";
$prev_feature_file = undef;
$prev_score_file = undef;
for (my $i=$firstrun;$i<=$run;$i++){
if (defined $prev_feature_file){
$prev_feature_file = "${prev_feature_file},run${i}.${base_feature_file}";
}
else{
$prev_feature_file = "run${i}.${base_feature_file}";
}
if (defined $prev_score_file){
$prev_score_file = "${prev_score_file},run${i}.${base_score_file}";
}
else{
$prev_score_file = "run${i}.${base_score_file}";
}
}
print "loading data from $prev_feature_file\n" if defined($prev_feature_file);
print "loading data from $prev_score_file\n" if defined($prev_score_file);
}
print "Training finished at ".`date`;
if (defined $allsorted){ safesystem ("\\rm -f $allsorted") or die; };
safesystem("\\cp -f $weights_in_file run$run.$weights_in_file") or die;
safesystem("\\cp -f $mert_logfile run$run.$mert_logfile") or die;
create_config($___CONFIG_BAK, "./moses.ini", \%used_triples, $run, $devbleu);
# just to be sure that we have the really last finished step marked
open F, "> finished_step.txt" or die "Can't mark finished step";
print F $run."\n";
close F;
#chdir back to the original directory # useless, just to remind we were not there
chdir($cwd);
} # end of local scope
sub store_new_lambda_values {
# given new lambda values (in given order), replace the 'val' element in our triples
my $triples = shift;
my $names = shift;
my $values = shift;
my %idx = ();
foreach my $i (0..scalar(@$values)-1) {
my $name = $names->[$i];
die "Missed name for lambda $values->[$i] (in @$values; names: @$names)"
if !defined $name;
if (!defined $idx{$name}) {
$idx{$name} = 0;
} else {
$idx{$name}++;
}
die "We did not optimize '$name', but moses returned it back to us"
if !defined $triples->{$name};
die "Moses gave us too many lambdas for '$name', we had ".scalar(@{$triples->{$name}})
." but we got at least ".$idx{$name}+1
if !defined $triples->{$name}->[$idx{$name}];
# set the corresponding field in triples
# print STDERR "Storing $i-th score as $name: $idx{$name}: $values->[$i]\n";
$triples->{$name}->[$idx{$name}]->[0] = $values->[$i];
}
}
sub dump_triples {
my $triples = shift;
foreach my $name (keys %$triples) {
foreach my $triple (@{$triples->{$name}}) {
my ($val, $min, $max) = @$triple;
print STDERR "Triples: $name\t$val\t$min\t$max ($triple)\n";
}
}
}
sub run_decoder {
my ($triples, $parameters, $run, $output_order_of_lambdas, $need_to_normalize) = @_;
my $filename_template = "run%d.best$___N_BEST_LIST_SIZE.out";
my $filename = sprintf($filename_template, $run);
print "params = $parameters\n";
# prepare the decoder config:
my $decoder_config = "";
my @vals = ();
foreach my $name (keys %$triples) {
$decoder_config .= "-$name ";
foreach my $triple (@{$triples->{$name}}) {
my ($val, $min, $max) = @$triple;
$decoder_config .= "%.6f ";
push @vals, $val;
}
}
if ($need_to_normalize) {
print STDERR "Normalizing lambdas: @vals\n";
my $totlambda=0;
grep($totlambda+=abs($_),@vals);
grep($_/=$totlambda,@vals);
}
print STDERR "DECODER_CFG = $decoder_config\n";
print STDERR " values = @vals\n";
$decoder_config = sprintf($decoder_config, @vals);
print "decoder_config = $decoder_config\n";
# run the decoder
my $nBest_cmd = "-n-best-size $___N_BEST_LIST_SIZE";
my $decoder_cmd;
if (defined $___JOBS && $___JOBS > 0) {
$decoder_cmd = "$moses_parallel_cmd $pass_old_sge -config $___CONFIG -inputtype $___INPUTTYPE -qsub-prefix mert$run -queue-parameters \"$queue_flags\" -decoder-parameters \"$parameters $decoder_config\" -n-best-list \"$filename $___N_BEST_LIST_SIZE\" -input-file $___DEV_F -jobs $___JOBS -decoder $___DECODER > run$run.out";
} else {
$decoder_cmd = "$___DECODER $parameters -config $___CONFIG -inputtype $___INPUTTYPE $decoder_config -n-best-list $filename $___N_BEST_LIST_SIZE -input-file $___DEV_F > run$run.out";
}
safesystem($decoder_cmd) or die "The decoder died. CONFIG WAS $decoder_config \n";
if (0 == scalar @$output_order_of_lambdas) {
# we have to peek at the nbestlist
@$output_order_of_lambdas = get_order_of_scores_from_nbestlist($filename);
}
# we have checked the nbestlist already, we trust the order of output scores does not change
return $filename;
}
sub get_order_of_scores_from_nbestlist {
# read the first line and interpret the ||| label: num num num label2: num ||| column in nbestlist
# return the score labels in order
my $fname_or_source = shift;
print STDERR "Peeking at the beginning of nbestlist to get order of scores: $fname_or_source\n";
open IN, $fname_or_source or die "Failed to get order of scores from nbestlist '$fname_or_source'";
my $line = <IN>;
close IN;
die "Line empty in nbestlist '$fname_or_source'" if !defined $line;
my ($sent, $hypo, $scores, $total) = split /\|\|\|/, $line;
$scores =~ s/^\s*|\s*$//g;
die "No scores in line: $line" if $scores eq "";
my @order = ();
my $label = undef;
foreach my $tok (split /\s+/, $scores) {
if ($tok =~ /^([a-z][0-9a-z]*):/i) {
$label = $1;
} elsif ($tok =~ /^-?[-0-9.e]+$/) {
# a score found, remember it
die "Found a score but no label before it! Bad nbestlist '$fname_or_source'!"
if !defined $label;
push @order, $label;
} else {
die "Not a label, not a score '$tok'. Failed to parse the scores string: '$scores' of nbestlist '$fname_or_source'";
}
}
print STDERR "The decoder returns the scores in this order: @order\n";
return @order;
}
sub create_config {
my $infn = shift; # source config
my $outfn = shift; # where to save the config
my $triples = shift; # the lambdas we should write
my $iteration = shift; # just for verbosity
my $bleu_achieved = shift; # just for verbosity
my %P; # the hash of all parameters we wish to override
# first convert the command line parameters to the hash
{ # ensure local scope of vars
my $parameter=undef;
print "Parsing --decoder-flags: |$___DECODER_FLAGS|\n";
$___DECODER_FLAGS =~ s/^\s*|\s*$//;
$___DECODER_FLAGS =~ s/\s+/ /;
foreach (split(/ /,$___DECODER_FLAGS)) {
if (/^\-([^\d].*)$/) {
$parameter = $1;
$parameter = $ABBR2FULL{$parameter} if defined($ABBR2FULL{$parameter});
}
else {
die "Found value with no -paramname before it: $_"
if !defined $parameter;
push @{$P{$parameter}},$_;
}
}
}
# Convert weights to elements in P
foreach my $abbr (keys %$triples) {
# First delete all weights params from the input, in short or long-named version
delete($P{$abbr});
delete($P{$ABBR2FULL{$abbr}});
# Then feed P with the current values
foreach my $feature (@{$used_triples{$abbr}}) {
my ($val, $min, $max) = @$feature;
my $name = defined $ABBR2FULL{$abbr} ? $ABBR2FULL{$abbr} : $abbr;
push @{$P{$name}}, $val;
}
}
# create new moses.ini decoder config file by cloning and overriding the original one
open(INI,$infn) or die "Can't read $infn";
delete($P{"config"}); # never output
print "Saving new config to: $outfn\n";
open(OUT,"> $outfn") or die "Can't write $outfn";
print OUT "# MERT optimized configuration\n";
print OUT "# decoder $___DECODER\n";
print OUT "# BLEU $bleu_achieved on dev $___DEV_F\n";
print OUT "# We were before running iteration $iteration\n";
print OUT "# finished ".`date`;
my $line = <INI>;
while(1) {
last unless $line;
# skip until hit [parameter]
if ($line !~ /^\[(.+)\]\s*$/) {
$line = <INI>;
print OUT $line if $line =~ /^\#/ || $line =~ /^\s+$/;
next;
}
# parameter name
my $parameter = $1;
$parameter = $ABBR2FULL{$parameter} if defined($ABBR2FULL{$parameter});
print OUT "[$parameter]\n";
# change parameter, if new values
if (defined($P{$parameter})) {
# write new values
foreach (@{$P{$parameter}}) {
print OUT $_."\n";
}
delete($P{$parameter});
# skip until new parameter, only write comments
while($line = <INI>) {
print OUT $line if $line =~ /^\#/ || $line =~ /^\s+$/;
last if $line =~ /^\[/;
last unless $line;
}
next;
}
# unchanged parameter, write old
while($line = <INI>) {
last if $line =~ /^\[/;
print OUT $line;
}
}
# write all additional parameters
foreach my $parameter (keys %P) {
print OUT "\n[$parameter]\n";
foreach (@{$P{$parameter}}) {
print OUT $_."\n";
}
}
close(INI);
close(OUT);
print STDERR "Saved: $outfn\n";
}
sub safesystem {
print STDERR "Executing: @_\n";
system(@_);
if ($? == -1) {
print STDERR "Failed to execute: @_\n $!\n";
exit(1);
}
elsif ($? & 127) {
printf STDERR "Execution of: @_\n died with signal %d, %s coredump\n",
($? & 127), ($? & 128) ? 'with' : 'without';
exit(1);
}
else {
my $exitcode = $? >> 8;
print STDERR "Exit code: $exitcode\n" if $exitcode;
return ! $exitcode;
}
}
sub ensure_full_path {
my $PATH = shift;
$PATH =~ s/\/nfsmnt//;
return $PATH if $PATH =~ /^\//;
my $dir = `pawd 2>/dev/null`;
if(!$dir){$dir = `pwd`;}
chomp($dir);
$PATH = $dir."/".$PATH;
$PATH =~ s/[\r\n]//g;
$PATH =~ s/\/\.\//\//g;
$PATH =~ s/\/+/\//g;
my $sanity = 0;
while($PATH =~ /\/\.\.\// && $sanity++<10) {
$PATH =~ s/\/+/\//g;
$PATH =~ s/\/[^\/]+\/\.\.\//\//g;
}
$PATH =~ s/\/[^\/]+\/\.\.$//;
$PATH =~ s/\/+$//;
$PATH =~ s/\/nfsmnt//;
return $PATH;
}
sub scan_config {
my $ini = shift;
my $inishortname = $ini; $inishortname =~ s/^.*\///; # for error reporting
# we get a pre-filled counts, because some lambdas are always needed (word penalty, for instance)
# as we walk though the ini file, we record how many extra lambdas do we need
# and finally, we report it
# in which field (counting from zero) is the filename to check?
my %where_is_filename = (
"ttable-file" => 4,
"generation-file" => 3,
"lmodel-file" => 3,
"distortion-file" => 3,
"global-lexical-file" => 1,
);
# by default, each line of each section means one lambda, but some sections
# explicitly state a custom number of lambdas
my %where_is_lambda_count = (
"ttable-file" => 3,
"generation-file" => 2,
"distortion-file" => 2,
"link-param-count" => 0,
);
my %weight_section_short_names = (%FULL2ABBR,
map { ($_, $_) } keys %ABBR2FULL);
# maps both long and short names of weight sections to the short names
my $config_weights;
# to collect all weight values from moses.ini
# $config_weights->{shortname} is a reference to array of features
open INI, $ini or die "Can't read $ini";
my $section = undef; # name of the section we are reading
my $shortname = undef; # the corresponding short name
my $nr = 0;
my $error = 0;
my %defined_files;
my %defined_steps; # check the ini file for compatible mapping steps and actually defined files
while (<INI>) {
$nr++;
chomp;
next if /^\s*#/; # skip comments
next if /^\s*$/; # skip blank lines
if (/^\[([^\]]*)\]\s*$/) {
$section = $1;
$shortname = $TABLECONFIG2ABBR{$section};
next;
}
if (defined $section && defined $weight_section_short_names{$section}) {
# this is a weight, store it
my $weightname = $weight_section_short_names{$section};
$config_weights->{$weightname} = []
if ! defined $config_weights->{$weightname};
push @{$config_weights->{$weightname}}, $_;
}
if (defined $section && $section eq "mapping") {
# keep track of mapping steps used
$defined_steps{$1}++ if /^([TG])/ || /^\d+ ([TG])/;
}
if (defined $section
&& (defined $where_is_filename{$section}
|| defined $where_is_lambda_count{$section})) {
# this ini section is relevant to lambdas
my @flds = split / +/;
my $filenamefield = $where_is_filename{$section};
if (defined $filenamefield) {
my $fn = $flds[$filenamefield];
print STDERR "Checking the filename in $section: $fn\n"
if $verbose;
if (defined $fn && $fn !~ /^\s+$/) {
# this is a filename! check it
if ($fn !~ /^\//) {
$error = 1;
print STDERR "$inishortname:$nr:Filename not absolute: $fn\n";
}
if (! -s $fn && ! -s "$fn.gz" && ! -s "$fn.binphr.idx"
&& ! -s "$fn.binlexr.idx" ) {
$error = 1;
print STDERR "$inishortname:$nr:File does not exist or empty: $fn\n";
}
# remember the number of files used, to know how many lambdas do we need
die "No short name was defined for section $section!"
if ! defined $shortname;
$defined_files{$shortname}++;
}
}
my $lambdacountfield = $where_is_lambda_count{$section};
# how many lambdas does this model need?
# either specified explicitly, or the default, i.e. one
my $needlambdas = defined $lambdacountfield
? $flds[$lambdacountfield] : 1;
print STDERR "Config needs $needlambdas lambdas for $section (i.e. $shortname)\n" if $verbose;
if (!defined $___LAMBDA # user provides all lambdas on his own
&& (!defined $additional_triples->{$shortname}
|| scalar(@{$additional_triples->{$shortname}}) < $needlambdas)
&& (!defined $additional_tripes_loop->{$shortname})
) {
# Add triples with default values
if (!defined $additional_triples->{$shortname}) {
$additional_triples->{$shortname} = ();
}
while (scalar(@{$additional_triples->{$shortname}}) < $needlambdas) {
push @{$additional_triples->{$shortname}}, [1,-1,1];
}
}
# note: models may use less parameters than the maximum number
# of triples, but it is actually bad, because then the ranges
# may be meant for another parameter
my @triplets = @{$additional_triples->{$shortname}};
for(my $lambda=0;$lambda<$needlambdas;$lambda++) {
my $triplet = $lambda;
$triplet %= scalar(@triplets)
if $additional_tripes_loop->{$shortname};
my ($start, $min, $max)
= @{$triplets[$triplet]};
push @{$used_triples{$shortname}}, [$start, $min, $max];
}
}
}
die "$inishortname: File was empty!" if !$nr;
close INI;
for my $pair (qw/T=tm=translation G=g=generation/) {
my ($tg, $shortname, $label) = split /=/, $pair;
$defined_files{$shortname} = 0 if ! defined $defined_files{$shortname};
$defined_steps{$tg} = 0 if ! defined $defined_steps{$tg};
if ($defined_files{$shortname} != $defined_steps{$tg}) {
print STDERR "$inishortname: You defined $defined_files{$shortname} files for $label but use $defined_steps{$tg} in [mapping]!\n";
$error = 1;
}
}
# The distance-based reordering model is never mentioned in moses.ini,
# except there is one extra weight-d in the list. So if we spot this
# one extra weight-d, we actually insert the triple for it.
# Hierarchical moses has no distance-based reordering.
push @{$used_triples{"d"}}, [1.0, 0.0, 2.0]
if defined $config_weights->{"d"}
&& (!defined $used_triples{"d"}
|| scalar @{$config_weights->{"d"}}
== scalar @{$used_triples{"d"}} +1);
# check the weights provided in the ini file and plug them into the triples
# if --starting-weights-from_ini
foreach my $weightname (keys %used_triples) {
if (!defined $config_weights->{$weightname}) {
print STDERR "$inishortname:Model requires weights '$weightname' but none were found in the ini file.\n";
$error = 1;
next;
}
my $thesetriplets = $used_triples{$weightname};
my $theseconfig_weights = $config_weights->{$weightname};
if (scalar(@$thesetriplets) != scalar(@$theseconfig_weights)) {
print STDERR "$inishortname:Mismatched number of weights for '$weightname'. Expected "
.scalar(@$thesetriplets) .", got ".scalar(@$theseconfig_weights)."\n";
$error = 1;
next;
}
if ($starting_weights_from_ini) {
# copy weights from moses.ini to the starting value of used_triplets
for (my $i=0; $i < @$theseconfig_weights; $i++) {
$thesetriplets->[$i]->[0] = $theseconfig_weights->[$i];
}
}
}
exit(1) if $error;
return (\%defined_files);
}
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