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@@ -18,28 +18,28 @@ If you're not sure if your project meets these requirements, please send an emai We'll review all requests and accept them at our discretion. If accepted, your project will be listed below and we will send you a quote. -## Here's how to apply +## How to apply 1. Create a gitlab.com account for your open source project: https://gitlab.com/users/sign_in -1. Edit this file and add an entry to the [Open source projects using GitLab Ultimate or Gold](#open-source-projects-using-gitlab-ultimate-or-gold) -section at the bottom of this page (all lines required): - +1. Create a fork of this project +1. Edit the [`projects.yaml` file](data/projects.yaml) and add an entry for your project using this template: ``` - ### Project name - A short description of what you do and why. - https://myawesomeproject.org - Ultimate or Gold? + - + project_name: 'Project awesome' + project_description: 'Describe what your project is about.' + project_url: 'https://projectawesome.org (if you do not have a project site, use the GitLab repository URL)' + gitlab_plan: Gold or Ultimate ``` - -1. Commit your changes to a new fork and start a new Merge Request. +1. Commit the changes to your fork and submit a new Merge Request against this project. 1. Fill out the form at our [OSS page](https://about.gitlab.com/solutions/open-source/) ## License/subscription details -- You'll receive a 1 year license for GitLab Ultimate or subscription for GitLab Gold. -- Support is not included, but can be purchased for 95% off, at $4.95/user/month. [Contact Sales](https://ultimate-free-post.about.gitlab.com/sales/) for that. -- Your license/subscription can be renewed each year if your project still meets the requirements. - - [Contact Sales](https://ultimate-free-post.about.gitlab.com/sales/) 30 days before your license/subscription ends. +- You'll receive either a license for GitLab Ultimate or a subscription for GitLab Gold. +- Either of those will be valid for 1 year. After that period, a renewal will be required, which will be at no cost. +- Support is not included, but can be purchased for 95% off, at $4.95/user/month. [Contact Sales](https://about.gitlab.com/sales/) for that. +- Your license/subscription can be renewed each year for free if your project still meets the requirements. + - [Contact Sales](https://about.gitlab.com/sales/) 30 days before your license/subscription ends. - Licenses and subscriptions cannot be transferred or sold. ## Open source projects using GitLab Ultimate or Gold @@ -493,7 +493,7 @@ section at the bottom of this page (all lines required): An open source android based fork of OmniROM for OnePlus and other devices https://gitlab.com/HolyDragonProject/android Gold - + ### Fly Delta Virtual: Open Source Projects (OSP) Open sourced, community built projects for the phpVMS platform. https://gitlab.com/flydeltavirtual/osp @@ -683,22 +683,22 @@ section at the bottom of this page (all lines required): A research framework in ocean mapping (https://www.hydroffice.org) https://gitlab.com/HydrOffice Gold - + ### Fudaa Integration Platform For Scientific Codes https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Gold - + ### SIM-ScALA-BIM SIM-ScALA-BIM is an Abraca-what? board game clone written in Scala as final project elaboration for University exam. https://gitlab.com/abra-team/sim-scala-bim Gold - + ### eQuartier eQuartier is an association under the French law of 1901. We aim to give the local independant shops a way to take back the marketshare of big retail stores and online retailers. We empower local communities build around small local bike transportation companies, local shopkeepers and inhabitants. To do so we're developping an AGPL licenced web platform, first with prestashop and next based on solid project together with the cooperativism platform community in France. https://equartier.fr Gold - + ### malscan A linux malware scanner for web servers. https://malscan.com @@ -713,43 +713,42 @@ section at the bottom of this page (all lines required): Our vision is to bring our diverse open source communities together by facilitating the communication between us and our integration, deployment, delivery, and automation. https://openci.io Gold - + ### RiSiRiPlugin RiSiRiPlugin is a open-source plugin for schools with an warehouse that want to keep track of there stuff. https://github.com/MextroNL/risiriplugin Gold - + ### Fantom Foundation Fantom Foundation engages in blockchain research and open-sources everything. https://fantom.foundation Ultimate - + ### Screencam screen recorder Android app to record screen using native API and without root https://gitlab.com/vijai/screenrecorder Gold - + ### Mpm A cross-platform Assembler that supports Zilog Z80/Z180/Z380 CPU assembly language. Future works will support Elf format and Arm + Mips CPU's. https://gitlab.com/bits4fun/mpm Ultimate - + ### Propositum Combine open-source, portable tools to facilitate task & information management, automation, data manipulation and analytics. https://gitlab.com/xeijin/propositum Gold - + ### PushFish We aim to make Push notifications accessible for anyone who doesn't want to rely on others. https://gitlab.com/PushFish http://push.fish Gold ### KWB-R - Kompetenzzentrum Wasser Berlin gGmbH (KWB) is an international centre for water research and knowledge transfer. We are developing open-source tools - (mainly in R) for performing our research in a more reproducible way. + Kompetenzzentrum Wasser Berlin gGmbH (KWB) is an international centre for water research and knowledge transfer. We are developing open-source tools (mainly in R) for performing our research in a more reproducible way. https://github.com/kwb-r Gold - + ### RedServ A semi-fast python web framework. https://gitlab.com/Red_M/redserv @@ -759,7 +758,7 @@ section at the bottom of this page (all lines required): MyBB is a free and open source, community-based forum software project. https://mybb.com/ Gold - + ### TreasureHunt We develop a treasure hunt game for Android that started out as a student project and now because our hobby. https://gitlab.com/mowies/TreasureHunt @@ -769,12 +768,12 @@ section at the bottom of this page (all lines required): Aha! Event is built on the idea of showcasing a curated list of all the FLOSS conferences on a single platform. This helps open source enthusiasts track call for proposal (CFP), important dates, venue details etc. effortlessly. https://www.ahaevent.org Ultimate - + ### ASE Atomic Simulation Environment, A Python library for working with atoms https://wiki.fysik.dtu.dk/ase/ Gold - + ### Microservice Patterns This project will produce libraries to facilitate Microservice development using CQRS and ES patterns https://gitlab.com/cloud.yantra.oss/microservice-patterns-cqrs @@ -784,22 +783,22 @@ section at the bottom of this page (all lines required): A free and open-source operating system for handheld devices, based on the Android mobile platform. https://lineageos.org Gold - + ### HueMagic HueMagic provides several input and output nodes for Node-RED and is the most in-depth and easy to use solution to control Philips Hue bridges, lights, groups, scenes, taps, switches, motion sensors, temperature sensors and Lux sensors. https://gitlab.com/foddy/huemagic Gold - + ### LIP Computing Experimental Particle Physics Portuguese Laboratory, Computing Center group https://www.lip.pt Ultimate - + ### CodaProtocol Coda is a new cryptocurrency with a constant size blockchain, improving scaling while maintaining decentralization and security. https://codaprotocol.com Gold - + ### pynmet A python package to easy acess of brazilian meteorological sites data https://gitlab.com/sehnem/pynmet @@ -809,7 +808,7 @@ section at the bottom of this page (all lines required): Freifunk is a non-commercial wireless community network providing free and open internet access to the general public for that we are building the Freifunk mesh network in the metropolitan area of Frankfurt. Not just with the goal of supplying Internet access but also with the idea of building a decentralized public network and imparting the knowledge and the technical skills to do so. We use Gitlab for all our developments that are open source. https://frickel.cloud/ Ultimate - + ### VoxelGamesLib An open source framework to expand the game Minecraft with simple to complex mini games, promoting the use of modularity and enabling content creators without developer knowledge to customize existing or create new minigames by using a data driven approach. https://voxelgameslib.com/docs/ and https://github.com/VoxelGamesLib/VoxelGamesLibv2/ @@ -819,7 +818,7 @@ section at the bottom of this page (all lines required): FWUL - the most reliable adb/fastboot live system ever - to manage ANY Android without driver hassle https://code.binbash.it:8443/Carbon-Fusion/build_fwul (details: http://bit.do/FWULatXDA) Ultimate - + ### Linuxserver.io We containerise dozens of applications from across the web and release them as well documented, maintained and updated containers. https://linuxserver.io @@ -828,17 +827,13 @@ section at the bottom of this page (all lines required): ### NTPsec Secure, hardened, and improved implementation of Network Time Protocol derived from NTP Classic, Dave Mills’s original. https://gitlab.com/NTPsec/ntpsec - + Gold + ### OpenWISP - OpenWISP is a network management system that allows managing and automating several aspects of a network: - - dynamic auto-configuration of new nodes - - creation of VPN tunnels - - initialization of WiFi access points - - configuration of mesh networks - - configuration of any other network configuration supported by OpenWRT + OpenWISP is a network management system that allows managing and automating several aspects of a network: dynamic auto-configuration of new nodes, creation of VPN tunnels, initialization of WiFi access points, configuration of mesh networks, configuration of any other network configuration supported by OpenWRT http://openwisp.org/ Gold - + ### The Hammer An open source multifunctional Discord bot https://gitlab.com/TheHammerBot @@ -848,7 +843,7 @@ section at the bottom of this page (all lines required): NLX is an open source inter-organisational system facilitating federated authentication, secure connecting and protocolling in a large-scale, dynamic API landscape. https://gitlab.com/commonground/nlx Gold - + ### Open Technologies Alliance - GFOSS GFOSS – Open Technologies Alliance is a non-profit organization founded in 2008, 36 Universities and Research Centers are shareholders of GFOSS. Our main goal is to promote Openness through the use and the development of Open Standards and Open Technologies in Education, Public Administration and Business in Greece. We are platform for Open Standards, Free Software, Open Content, Open Data & Open Hardware in Greece. The major Greek Universities and Research Centers participate in GFOSS – Open Technologies Alliance, while leading members of the Greek community of developers play a key role in the implementation of our policies. http:/gfoss.eu @@ -858,27 +853,27 @@ section at the bottom of this page (all lines required): We are building a scientific platform to easily run experiments using Android and pretty much any kind of hardware that supports USB Serial or BT Serial. Our goal is to make possible for everyone to build their own survey, run measurements and compare results with other contributors. http://blog.our-sci.net/ Gold - + ### Daedalus Project - Daedalus project aims to be a powerfull in interface for managing orchestrated applications and server configuration across multiple SaaS providers. + Daedalus project aims to be a powerful in interface for managing orchestrated applications and server configuration across multiple SaaS providers. https://git.daedalus-project.io/daedalusproject Ultimate - + ### Glasgow Haskell Compiler An industrial-strength implementation of the Haskell programming language http://ghc.haskell.org/ Gold - + ### Neurochain Neurochain is a new augmented blockchain based on intelligent decision making mechanisms. https://www.neurochaintech.io/ Gold - + ### @apifie/node-microservice node-microservice is a Node JS module / framework / boiler-plate / blueprint to accelerate and standardize micro-services development https://gitlab.com/apifie/nodems/node-microservice Gold - + ### @apifie/full-feature-micro-service-example It provies some examples / samples to use @apifie/node-microservice (above) https://gitlab.com/apifie/nodems/examples/full-feature-micro-service-example @@ -893,224 +888,268 @@ section at the bottom of this page (all lines required): A safer internet through transparency: on a mission to have 1.000.000 vulnerabilities fixed, forever. Showcase: https://faalkaart.nl Repo: https://gitlab.com/failmap Gold - + ### uMod Universal modding platform and plugin API for Unity, Unreal, .NET/C#, and C++ games https://umod.org Gold + ### Cucumber Linux Cucumber Linux aims to provide a Linux distribution that is usable as an every day, general purpose operating system. It aims to do this in as minimalistic a way as possible and in a way that follows the Unix Philosophy. Our mission is three fold: to focus on the distribution's simplicity, stability and security. https://cucumberlinux.com/ Ultimate + ### Gitlab server EMBL-EBI Gitlab server hosting Open Spurce project from EMBL-EBI https://gitlabci.ebi.ac.uk or https://gitlab.ebi.ac.uk Ultimate - + ### ArrayExpress -MIAME-standard compliant resource that stores functional genomics experiments performed using RNA-Seq/ChIP-Seq and array-based technologies -https://www.ebi.ac.uk/arrayexpress -ultimate -### BioModels -BioModels is a database of published mathematical models describing biological processes. -https://www.ebi.ac.uk/biomodels -ultimate -### BioSamples -The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases, such as ArrayExpress, the European Nucleotide Archive or Proteomics Identificates Database. -https://www.ebi.ac.uk/biosamples -ultimate -### BioStudies -The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI." -https://www.ebi.ac.uk/biostudies -ultimate -### Chemical Entitites of Biological Interest -ChEBI (Chemical Entities of Biological Interest) is a dictionary of small molecular entities. It is manually annotated and provides a chemistry ontology to describe small molecules, including their biological and chemical roles. -https://www.ebi.ac.uk/chebi -ultimate -### ChEMBL -ChEMBL is a database of bioactive compounds that focuses on interactions between small molecules and their macromolecular targets, including medicinal chemistry, clinical development and therapeutics data." -https://www.ebi.ac.uk/chembl -ultimate -### Complex Portal -The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. All data is freely available for search and download. -https://www.ebi.ac.uk/complexportal -ultimate -### EBI Metagenomics -The Metagenomics portal is an automated pipeline for the analysis and archiving of metagenomic data. -https://www.ebi.ac.uk/metagenomics -ultimate -### EBI Search -High performance text search engine specifically design for biological and biomedical data -https://www.ebi.ac.uk/ebisearch -ultimate -### Experimental Factor Ontology -The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. -https://www.ebi.ac.uk/efo -ultimate -### European Genome-phenome Archive -The European Genome-phenome Archive (EGA) allows users to explore datasets from numerous genotype experiments-including case-control, population and family studies-that are supplied by a range of data providers. -https://www.ebi.ac.uk/ega -ultimate -### Electron Microscopy Data Bank -The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. -https://www.ebi.ac.uk/emdb -ultimate -### Electron Microscopy Public Image Archive -EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure -https://www.ebi.ac.uk/empiar -ultimate -### European Nucleotide Archive -The European Nucleotide Archive (ENA), a member of the International Nucleotide Sequence Database Collaboration, contains all the nucleotide sequences in the public domain and consolidates data from EMBL-Bank, the European Trace Archive and the Sequence Read Archive. -https://www.ebi.ac.uk/ena -ultimate -### Ensembl Curated annotation on selected eukaryotic genomes. -https://www.ensembl.org -ultimate -### Ensembl Genomes -Ensembl Genomes is a portal providing access to genome-scale data from bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces based on the Ensembl software platform. -https://www.ensemblgenomes.org -ultimate -### Enzyme Portal -The Enzyme Portal integrates publicly available information from: the UniProt Knowledgebase; the Protein Data Bank in Europe; Rhea, a database of enzyme-catalyzed reactions; Reactome; IntEnz, a resource with enzyme nomenclature information; ChEBI; ChEMBL; Cofactor and MACiE. -https://www.ebi.ac.uk/ensymeportal -ultimate -### EuropePMC -Europe PubMedCentral (EuropePMC) contains over 2 million full text life science research articles, of which around 400 000 are open access. It incorporates CiteXplore content and functions to provide integrated text-mining tools as well as grant-reporting services. -http://www.europepmc.org -ultimate -### European Variation Archive,The European Variation Archive is an open-access database of all types of genetic variation data from all species. -https://www.ebi.ac.uk/eva -ultimate -### Expression Atlas -The Expression Atlas allows users to search for gene expression changes measured in various cell types, organism parts, and disease states. It represents a curated subset of the ArrayExpress Achive experiments. -https://www.ebi.ac.uk/gxa -ultimate -### The Gene Ontology -The Gene Ontology (GO) provides a controlled vocabulary to describe gene and gene product attributes in any organism. -https://www.ebi.ac.uk/goa -ultimate -### NHGRI-EBI Catalog of published genome-wide association studies -The Catalog is a quality controlled, manually curated, literature-derived collection of all published genome-wide association studies assaying at least 100,000 SNPs and all SNP-trait associations with p-values < 1.0 x 10-5 (Hindorff et al., 2009). -https://www.ebi.ac.uk/gwas -ultimate -### HGNC -HGNC is responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication. -https://www.genenames.org -ultimate -### Identifiers.org -Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain. -https://www.identifiers.org -ultimate -### International Genome Sample Resource/1000 Genomes -The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The goal of the 1000 Genomes Project was to find most genetic variants with frequencies of at least 1% in the populations studied. -http://www.1000genomes.org -ultimate -### IntAct -IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. -https://www.ebi.ac.uk/intact -ultimate -### IntEnz -IntEnz is a database of enzyme nomenclature that also provides enzyme classifications based on the nature of catalysed reactions. IntEnz is produced in collaboration with the SIB Swiss Institute of Bioinformatics. -https://www.ebi.ac.uk/intenz -ultimate -### InterPro -Classifies proteins into families and predicts the presence of important domains and sites -https://www.ebi.ac.uk/interpro -ultimate -### MetaboLights -MetaboLights is a database for metabolomics experiments and derived information. -https://www.ebi.ac.uk/metabolights -ultimate -### IMPC -The International Mouse Phenotyping Consortium (IMPC) is an international scientific endeavour to create and characterize the phenotype of 20,000 knockout mouse strains. -https://www.ebi.ac.uk/impc -ultimate -### OLS -The Ontology Lookup Service provides a web service interface to query multiple ontologies from a single location with a unified output fromat. -https://www.ebi.ac.uk/ols -ultimate -### Protein Databank in Europe -The Protein Data Bank in Europe (PDBe) is the European part of the wwPDB for the collection, organisation and dissemination of data on biological macromolecular structures. -https://www.ebi.ac.uk/pdbe -ultimate -### Pfam -Pfam is a large collection of protein families represented by multiple sequence alignments and hidden Markov models. -https://pfam.xfam.org -ultimate -### PRIDE -PRIDE (The Proteomics Identifications Database) is a standards-compliant, public repository for proteomics data. It contains protein and peptide identifications and their associated supporting evidence. -https://www.ebi.ac.uk/pride -ultimate -### Reactome -Database of human biological pathways built from connected reactions that encompass all biological events as well as classical biochemical events. -https://www.reactome.org -ultimate -### Rfam -The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models. -https://rfam.xfam.org -ultimate -### RNAcentral -RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases. -https://www.rnacentral.org -ultimate -### SureChEMBL -SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. -https://www.surechembl.org/search/ -ultimate -### UniChem -UniChem is a very simple, large-scale non-redundant database of pointers between chemical structures and EMBL-EBI chemistry resources. -https://www.ebi.ac.uk/unichem -ultimate -### Universal Protein Resource -Curated annotation of publicly available portein sequences -https://www.uniprot.org -ultimate + MIAME-standard compliant resource that stores functional genomics experiments performed using RNA-Seq/ChIP-Seq and array-based technologies + https://www.ebi.ac.uk/arrayexpress + ultimate + + ### BioModels + BioModels is a database of published mathematical models describing biological processes. + https://www.ebi.ac.uk/biomodels + ultimate + + ### BioSamples + The BioSamples database aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI's assay databases, such as ArrayExpress, the European Nucleotide Archive or Proteomics Identificates Database. + https://www.ebi.ac.uk/biosamples + ultimate + + ### BioStudies + The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI." + https://www.ebi.ac.uk/biostudies + ultimate + + ### Chemical Entitites of Biological Interest + ChEBI (Chemical Entities of Biological Interest) is a dictionary of small molecular entities. It is manually annotated and provides a chemistry ontology to describe small molecules, including their biological and chemical roles. + https://www.ebi.ac.uk/chebi + ultimate + + ### ChEMBL + ChEMBL is a database of bioactive compounds that focuses on interactions between small molecules and their macromolecular targets, including medicinal chemistry, clinical development and therapeutics data." + https://www.ebi.ac.uk/chembl + ultimate + + ### Complex Portal + The Complex Portal is a manually curated, encyclopaedic resource of macromolecular complexes from a number of key model organisms. All data is freely available for search and download. + https://www.ebi.ac.uk/complexportal + ultimate + + ### EBI Metagenomics + The Metagenomics portal is an automated pipeline for the analysis and archiving of metagenomic data. + https://www.ebi.ac.uk/metagenomics + ultimate + + ### EBI Search + High performance text search engine specifically design for biological and biomedical data + https://www.ebi.ac.uk/ebisearch + ultimate + + ### Experimental Factor Ontology + The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for external projects such as the NHGRI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, and Cell Ontology. + https://www.ebi.ac.uk/efo + ultimate + + ### European Genome-phenome Archive + The European Genome-phenome Archive (EGA) allows users to explore datasets from numerous genotype experiments-including case-control, population and family studies-that are supplied by a range of data providers. + https://www.ebi.ac.uk/ega + ultimate + + ### Electron Microscopy Data Bank + The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. + https://www.ebi.ac.uk/emdb + ultimate + + ### Electron Microscopy Public Image Archive + EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload, download and reprocess the thousands of raw, 2D images used to build a 3D structure + https://www.ebi.ac.uk/empiar + ultimate + + ### European Nucleotide Archive + The European Nucleotide Archive (ENA), a member of the International Nucleotide Sequence Database Collaboration, contains all the nucleotide sequences in the public domain and consolidates data from EMBL-Bank, the European Trace Archive and the Sequence Read Archive. + https://www.ebi.ac.uk/ena + ultimate + + ### Ensembl + Curated annotation on selected eukaryotic genomes. + https://www.ensembl.org + ultimate + + ### Ensembl Genomes + Ensembl Genomes is a portal providing access to genome-scale data from bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces based on the Ensembl software platform. + https://www.ensemblgenomes.org + ultimate + + ### Enzyme Portal + The Enzyme Portal integrates publicly available information from: the UniProt Knowledgebase; the Protein Data Bank in Europe; Rhea, a database of enzyme-catalyzed reactions; Reactome; IntEnz, a resource with enzyme nomenclature information; ChEBI; ChEMBL; Cofactor and MACiE. + https://www.ebi.ac.uk/ensymeportal + ultimate + + ### EuropePMC + Europe PubMedCentral (EuropePMC) contains over 2 million full text life science research articles, of which around 400 000 are open access. It incorporates CiteXplore content and functions to provide integrated text-mining tools as well as grant-reporting services. + http://www.europepmc.org + ultimate + + ### European Variation Archive + The European Variation Archive is an open-access database of all types of genetic variation data from all species. + https://www.ebi.ac.uk/eva + ultimate + + ### Expression Atlas + The Expression Atlas allows users to search for gene expression changes measured in various cell types, organism parts, and disease states. It represents a curated subset of the ArrayExpress Achive experiments. + https://www.ebi.ac.uk/gxa + ultimate + + ### The Gene Ontology + The Gene Ontology (GO) provides a controlled vocabulary to describe gene and gene product attributes in any organism. + https://www.ebi.ac.uk/goa + ultimate + + ### NHGRI-EBI Catalog of published genome-wide association studies + The Catalog is a quality controlled, manually curated, literature-derived collection of all published genome-wide association studies assaying at least 100,000 SNPs and all SNP-trait associations with p-values < 1.0 x 10-5 (Hindorff et al., 2009). + https://www.ebi.ac.uk/gwas + ultimate + + ### HGNC + HGNC is responsible for approving unique symbols and names for human loci, including protein coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication. + https://www.genenames.org + ultimate + + ### Identifiers.org + Identifiers.org is a system providing resolvable persistent URIs used to identify data for the scientific community, with a current focus on the Life Sciences domain. + https://www.identifiers.org + ultimate + + ### International Genome Sample Resource/1000 Genomes + The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The goal of the 1000 Genomes Project was to find most genetic variants with frequencies of at least 1% in the populations studied. + http://www.1000genomes.org + ultimate + + ### IntAct + IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. + https://www.ebi.ac.uk/intact + ultimate + + ### IntEnz + IntEnz is a database of enzyme nomenclature that also provides enzyme classifications based on the nature of catalysed reactions. IntEnz is produced in collaboration with the SIB Swiss Institute of Bioinformatics. + https://www.ebi.ac.uk/intenz + ultimate + + ### InterPro + Classifies proteins into families and predicts the presence of important domains and sites + https://www.ebi.ac.uk/interpro + ultimate + + ### MetaboLights + MetaboLights is a database for metabolomics experiments and derived information. + https://www.ebi.ac.uk/metabolights + ultimate + + ### IMPC + The International Mouse Phenotyping Consortium (IMPC) is an international scientific endeavour to create and characterize the phenotype of 20,000 knockout mouse strains. + https://www.ebi.ac.uk/impc + Ultimate + + ### OLS + The Ontology Lookup Service provides a web service interface to query multiple ontologies from a single location with a unified output fromat. + https://www.ebi.ac.uk/ols + Ultimate + + ### Protein Databank in Europe + The Protein Data Bank in Europe (PDBe) is the European part of the wwPDB for the collection, organisation and dissemination of data on biological macromolecular structures. + https://www.ebi.ac.uk/pdbe + Ultimate + + ### Pfam + Pfam is a large collection of protein families represented by multiple sequence alignments and hidden Markov models. + https://pfam.xfam.org + Ultimate + + ### PRIDE + PRIDE (The Proteomics Identifications Database) is a standards-compliant, public repository for proteomics data. It contains protein and peptide identifications and their associated supporting evidence. + https://www.ebi.ac.uk/pride + Ultimate + + ### Reactome + Database of human biological pathways built from connected reactions that encompass all biological events as well as classical biochemical events. + https://www.reactome.org + Ultimate + + ### Rfam + The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models. + https://rfam.xfam.org + Ultimate + + ### RNAcentral + RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases. + https://www.rnacentral.org + Ultimate + ### SureChEMBL + SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. + https://www.surechembl.org/search/ + Ultimate + + ### UniChem + UniChem is a very simple, large-scale non-redundant database of pointers between chemical structures and EMBL-EBI chemistry resources. + https://www.ebi.ac.uk/unichem + Ultimate + + ### Universal Protein Resource + Curated annotation of publicly available portein sequences + https://www.uniprot.org + Ultimate ### Libre Space Foundation A non-profit organization creating open source space technologies. https://libre.space + Gold + ### Astian OS It is an operating system based on Ubuntu but inheriting the concept of Firefox OS, we developed an operating system that fully promotes WebApps, user privacy and security. At the moment Astian OS is aimed at desktop and ARM devices and later will be for mobile devices. Using the desktop environment Sauce Desktop also free software project using GTK and web technology. Developed by [Astian Foundation](ḧttps://astian.org) https://www.astian.org/astian-os Gold + ### PantherX OS The only user-friendly desktop operating system, that gives people without a PHD in computer science, the power to control how their computer operates and connects. https://www.pantherx.org/ Ultimate + ### ella + Open source variant interpretation tool + https://allel.es + Gold -### ella -Open source variant interpretation tool -https://allel.es -Gold + ### Event Store + An open-source and functional database in Java. + https://gitlab.com/mwillema/eventstore + Gold + + ### Okapi Framework + A cross-platform and free open-source set of components and applications that offer extensive support for localizing and translating documentation and software. + http://okapiframework.org/ + Gold -### Event Store -An open-source and functional database in Java. -https://gitlab.com/mwillema/eventstore -Gold + ### MathHub.info + MathHub.info is a portal for active mathematical documents and knowledge. It uses [a slightly patched instance of GitLab](http://gl.mathhub.info) for storing and versioning the source and generated files representing the mathematical knowledge. + https://mathhub.info + Ultimate -### Okapi Framework -A cross-platform and free open-source set of components and applications that offer extensive support for localizing and translating documentation and software. -http://okapiframework.org/ -Gold -### MathHub.info -MathHub.info is a portal for active mathematical documents and knowledge. It uses [a slightly patched instance of GitLab](http://gl.mathhub.info) for storing and versioning the source and generated files representing the mathematical knowledge. -https://mathhub.info -Ultimate ### Fork AD - Fork AD is a fork of 0 A.D. a free, open-source, - cross-platform real-time strategy game of ancient warfare. + Fork AD is a fork of 0 A.D. a free, open-source, cross-platform real-time strategy game of ancient warfare. https://gitlab.com/fork-ad Gold - -### Amethyst Engine - A free, open-source game engine written in Rust - https://amethyst.rs - Gold - - -### cqOS -We're CryptoQuarry Inc, a small team of engineers working on fully autonomous and self-healing crypto mining warehouses. We noticed there's no usable open source OS for mining crypto, and that lots of people have capitalized on making very minor features and selling them for major costs. We want to change that space and create a free, open-source OS that miners can use at any scale: small, medium, or large! The whole spirit of cryptocurrencies is that everything is community-driven and that any layman can start mining, and we want to help bridge that gap. -https://gitlab.com/CryptoQuarry/cqOS -Gold
\ No newline at end of file + + ### Amethyst Engine + A free, open-source game engine written in Rust + https://amethyst.rs + Gold + + ### cqOS + We're CryptoQuarry Inc, a small team of engineers working on fully autonomous and self-healing crypto mining warehouses. We noticed there's no usable open source OS for mining crypto, and that lots of people have capitalized on making very minor features and selling them for major costs. We want to change that space and create a free, open-source OS that miners can use at any scale: small, medium, or large! The whole spirit of cryptocurrencies is that everything is community-driven and that any layman can start mining, and we want to help bridge that gap. + https://gitlab.com/CryptoQuarry/cqOS + Gold |