--- stage: Data Stores group: Database info: To determine the technical writer assigned to the Stage/Group associated with this page, see https://about.gitlab.com/handbook/product/ux/technical-writing/#assignments --- # PostgreSQL **(FREE SELF)** This page contains information about PostgreSQL the GitLab Support team uses when troubleshooting. GitLab makes this information public, so that anyone can make use of the Support team's collected knowledge. WARNING: Some procedures documented here may break your GitLab instance. Use at your own risk. If you're on a [paid tier](https://about.gitlab.com/pricing/) and aren't sure how to use these commands, [contact Support](https://about.gitlab.com/support/) for assistance with any issues you're having. ## Start a database console ::Tabs :::TabTitle Linux package (Omnibus) Recommended for: - Single-node instances. - Scaled out or hybrid environments, on the Patroni nodes, usually the leader. - Scaled out or hybrid environments, on the server running the PostgreSQL service. ```shell sudo gitlab-psql ``` On a single-node instance, or a web or Sidekiq node you can also use the Rails database console, but it takes longer to initialize: - In [GitLab 14.2 and later](https://gitlab.com/gitlab-org/gitlab/-/issues/341210): ```shell sudo gitlab-rails db-console --database main ``` - In GitLab 14.1 and earlier: ```shell sudo gitlab-rails db-console ``` :::TabTitle Docker ```shell docker exec -it gitlab-psql ``` :::TabTitle Self-compiled (source) Use the `psql` command that's part of [your PostgreSQL installation](../../install/installation.md#7-database). ```shell sudo -u git -H psql -d gitlabhq_production ``` :::TabTitle Helm chart (Kubernetes) - If you run a hybrid environment, and PostgreSQL runs on a Linux packaged installation (Omnibus), the recommended approach is to use the database console locally on those servers. Refer to the details for Linux package. - Use the console that's part of your external third-party PostgreSQL service. - Run `gitlab-rails db-console` in the toolbox pod. - Refer to our [Kubernetes cheat sheet](https://docs.gitlab.com/charts/troubleshooting/kubernetes_cheat_sheet.html#gitlab-specific-kubernetes-information) for details. ::EndTabs To exit the console, type: `quit`. ## Other GitLab PostgreSQL documentation This section is for links to information elsewhere in the GitLab documentation. ### Procedures - [Database procedures for Linux package installations](https://docs.gitlab.com/omnibus/settings/database.html) including: - SSL: enabling, disabling, and verifying. - Enabling Write Ahead Log (WAL) archiving. - Using an external (non-Omnibus) PostgreSQL installation; and backing it up. - Listening on TCP/IP as well as or instead of sockets. - Storing data in another location. - Destructively reseeding the GitLab database. - Guidance around updating packaged PostgreSQL, including how to stop it from happening automatically. - [Information about external PostgreSQL](../postgresql/external.md). - [Running Geo with external PostgreSQL](../geo/setup/external_database.md). - [Upgrades when running PostgreSQL configured for HA](https://docs.gitlab.com/omnibus/settings/database.html#upgrading-a-gitlab-ha-cluster). - Consuming PostgreSQL from [within CI runners](../../ci/services/postgres.md). - Managing PostgreSQL versions on Linux package installations [from the development docs](https://docs.gitlab.com/omnibus/development/managing-postgresql-versions.html). - [PostgreSQL scaling](../postgresql/replication_and_failover.md) - Including [troubleshooting](../postgresql/replication_and_failover.md#troubleshooting) `gitlab-ctl patroni check-leader` and PgBouncer errors. - [Developer database documentation](../../development/feature_development.md#database-guides), some of which is absolutely not for production use. Including: - Understanding EXPLAIN plans. ## Support topics ### Database deadlocks References: - [Issue #1 Deadlocks with GitLab 12.1, PostgreSQL 10.7](https://gitlab.com/gitlab-org/gitlab/-/issues/30528). - [Customer ticket (internal) GitLab 12.1.6](https://gitlab.zendesk.com/agent/tickets/134307) and [Google doc (internal)](https://docs.google.com/document/d/19xw2d_D1ChLiU-MO1QzWab-4-QXgsIUcN5e_04WTKy4). - [Issue #2 deadlocks can occur if an instance is flooded with pushes](https://gitlab.com/gitlab-org/gitlab/-/issues/33650). Provided for context about how GitLab code can have this sort of unanticipated effect in unusual situations. ```plaintext ERROR: deadlock detected ``` Three applicable timeouts are identified in the issue [#30528](https://gitlab.com/gitlab-org/gitlab/-/issues/30528); our recommended settings are as follows: ```ini deadlock_timeout = 5s statement_timeout = 15s idle_in_transaction_session_timeout = 60s ``` Quoting from issue [#30528](https://gitlab.com/gitlab-org/gitlab/-/issues/30528): > "If a deadlock is hit, and we resolve it through aborting the transaction after a short period, then the retry mechanisms we already have will make the deadlocked piece of work try again, and it's unlikely we'll deadlock multiple times in a row." NOTE: In Support, our general approach to reconfiguring timeouts (applies also to the HTTP stack) is that it's acceptable to do it temporarily as a workaround. If it makes GitLab usable for the customer, then it buys time to understand the problem more completely, implement a hot fix, or make some other change that addresses the root cause. Generally, the timeouts should be put back to reasonable defaults after the root cause is resolved. In this case, the guidance we had from development was to drop `deadlock_timeout` or `statement_timeout`, but to leave the third setting at 60 seconds. Setting `idle_in_transaction` protects the database from sessions potentially hanging for days. There's more discussion in [the issue relating to introducing this timeout on GitLab.com](https://gitlab.com/gitlab-com/gl-infra/production/-/issues/1053). PostgreSQL defaults: - `statement_timeout = 0` (never) - `idle_in_transaction_session_timeout = 0` (never) Comments in issue [#30528](https://gitlab.com/gitlab-org/gitlab/-/issues/30528) indicate that these should both be set to at least a number of minutes for all Linux package installations (so they don't hang indefinitely). However, 15 s for `statement_timeout` is very short, and is only effective if the underlying infrastructure is very performant. See current settings with: ```shell sudo gitlab-rails runner "c = ApplicationRecord.connection ; puts c.execute('SHOW statement_timeout').to_a ; puts c.execute('SHOW deadlock_timeout').to_a ; puts c.execute('SHOW idle_in_transaction_session_timeout').to_a ;" ``` It may take a little while to respond. ```ruby {"statement_timeout"=>"1min"} {"deadlock_timeout"=>"0"} {"idle_in_transaction_session_timeout"=>"1min"} ``` These settings can be updated in `/etc/gitlab/gitlab.rb` with: ```ruby postgresql['deadlock_timeout'] = '5s' postgresql['statement_timeout'] = '15s' postgresql['idle_in_transaction_session_timeout'] = '60s' ``` Once saved, [reconfigure GitLab](../restart_gitlab.md#reconfigure-a-linux-package-installation) for the changes to take effect. NOTE: These are Linux package settings. If an external database, such as a customer's PostgreSQL installation or Amazon RDS is being used, these values don't get set, and would have to be set externally. ### Temporarily changing the statement timeout WARNING: The following advice does not apply in case [PgBouncer](../postgresql/pgbouncer.md) is enabled, because the changed timeout might affect more transactions than intended. In some situations, it may be desirable to set a different statement timeout without having to [reconfigure GitLab](../restart_gitlab.md#reconfigure-a-linux-package-installation), which in this case would restart Puma and Sidekiq. For example, a backup may fail with the following errors in the output of the [backup command](../../administration/backup_restore/index.md#back-up-gitlab) because the statement timeout was too short: ```plaintext pg_dump: error: Error message from server: server closed the connection unexpectedly ``` You may also see errors in the [PostgreSQL logs](../logs/index.md#postgresql-logs): ```plaintext canceling statement due to statement timeout ``` To temporarily change the statement timeout: 1. Open `/var/opt/gitlab/gitlab-rails/etc/database.yml` in an editor 1. Set the value of `statement_timeout` to `0`, which sets an unlimited statement timeout. 1. [Confirm in a new Rails console session](../operations/rails_console.md#using-the-rails-runner) that this value is used: ```shell sudo gitlab-rails runner "ActiveRecord::Base.connection_config[:variables]" ``` 1. Perform the action for which you need a different timeout (for example the backup or the Rails command). 1. Revert the edit in `/var/opt/gitlab/gitlab-rails/etc/database.yml`. ## Troubleshooting ### Database is not accepting commands to avoid wraparound data loss This error likely means that `autovacuum` is failing to complete its run: ```plaintext ERROR: database is not accepting commands to avoid wraparound data loss in database "gitlabhq_production" ``` Or ```plaintext ERROR: failed to re-find parent key in index "XXX" for deletion target page XXX ``` To resolve the error, run `VACUUM` manually: 1. Stop GitLab with the command `gitlab-ctl stop`. 1. Place the database in single-user mode with the command: ```shell /opt/gitlab/embedded/bin/postgres --single -D /var/opt/gitlab/postgresql/data gitlabhq_production ``` 1. In the `backend>` prompt, run `VACUUM;`. This command can take several minutes to complete. 1. Wait for the command to complete, then press Control + D to exit. 1. Start GitLab with the command `gitlab-ctl start`. ### GitLab database requirements See [database requirements](../../install/requirements.md#database) and review and install the [required extension list](../../install/postgresql_extensions.md). ### Serialization errors in the `production/sidekiq` log If you receive errors like this example in your `production/sidekiq` log, read about [setting `default_transaction_isolation` into read committed](https://docs.gitlab.com/omnibus/settings/database.html#set-default_transaction_isolation-into-read-committed) to fix the problem: ```plaintext ActiveRecord::StatementInvalid PG::TRSerializationFailure: ERROR: could not serialize access due to concurrent update ``` ### PostgreSQL replication slot errors If you receive errors like this example, read about how to resolve PostgreSQL HA [replication slot errors](https://docs.gitlab.com/omnibus/settings/database.html#troubleshooting-upgrades-in-an-ha-cluster): ```plaintext pg_basebackup: could not create temporary replication slot "pg_basebackup_12345": ERROR: all replication slots are in use HINT: Free one or increase max_replication_slots. ``` ### Geo replication errors If you receive errors like this example, read about how to resolve [Geo replication errors](../geo/replication/troubleshooting.md#fixing-postgresql-database-replication-errors): ```plaintext ERROR: replication slots can only be used if max_replication_slots > 0 FATAL: could not start WAL streaming: ERROR: replication slot "geo_secondary_my_domain_com" does not exist Command exceeded allowed execution time PANIC: could not write to file 'pg_xlog/xlogtemp.123': No space left on device ``` ### Review Geo configuration and common errors When troubleshooting problems with Geo, you should: - Review [common Geo errors](../geo/replication/troubleshooting.md#fixing-common-errors). - [Review your Geo configuration](../geo/replication/troubleshooting.md), including: - Reconfiguring hosts and ports. - Reviewing and fixing the user and password mappings. ### Mismatch in `pg_dump` and `psql` versions If you receive errors like this example, read about how to [back up and restore a non-packaged PostgreSQL database](https://docs.gitlab.com/omnibus/settings/database.html#backup-and-restore-a-non-packaged-postgresql-database): ```plaintext Dumping PostgreSQL database gitlabhq_production ... pg_dump: error: server version: 13.3; pg_dump version: 14.2 pg_dump: error: aborting because of server version mismatch ``` ### Extension `btree_gist` is not allow-listed Deploying PostgreSQL on an Azure Database for PostgreSQL - Flexible Server may result in this error: ```plaintext extension "btree_gist" is not allow-listed for "azure_pg_admin" users in Azure Database for PostgreSQL ``` To resolve this error, [allow-list the extension](https://learn.microsoft.com/en-us/azure/postgresql/flexible-server/concepts-extensions#how-to-use-postgresql-extensions) prior to install.