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small fixes adnm tentative new keywords
those discussed by campbell and brecht are still there, but commented
with these keywords I'm happy how booleans went, committing to discuss with cambpell
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- fixed a bug: it wasn't updating checks when importing from py file
- removed the global input_filename, I didn't like it very much
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Re-introducing the modification made by Cambpell yesterday [rev., I copied the file over and forgot to restore this.
Sorry for the noise :)
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- rna_api.py now doesn't have work parameters anymore (note, changes, keyword-check)
- header implementation fixed
- removed 3 unuseful/already commented lines
- renamed a function
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- new folder rna_cleanup/
- moved na_api_cleanup.txt in rna_cleanup/
- rna_cleaner.py is a script to help cleaning rna names, pasting the help below for those interested
Basically after you run this on a original file, the script produces 2 file .txt and .py that you can edit.
You can skip to edit things liek "changed" or "same" or check if the "to" field is correct or not.
When you re-run this script it will check these thigns and will produce a consistent output file again.
Also, you can sort lines at will.
$ ./rna_cleaner.py -h
HELP:
Run this script to re-format the edits you make in the input file.
Do quick modification to important fields like 'to' and don't care about fields like 'changed' or 'description' and save.
The script outputs 3 files:
1) *_clean.txt: is formatted same as the .txt input, can be edited by user.
2) *_clean.py: is formatted same as the .py input, can be edited by user.
3) rna_api.py is not formatted for readability and go under complete check. Can be used for rna cleanup.
USAGE:
./rna_cleaner.py input-file (.txt|.py) order-priority (note|changed|class|from|to|kw).
./rna_cleaner.py -h for help
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