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authorJoseph Mingrone <jrm@FreeBSD.org>2022-11-13 05:35:29 +0300
committerJoseph Mingrone <jrm@FreeBSD.org>2022-11-13 05:35:29 +0300
commita875dde83e05c32752b096808e6b3ca50088a8a3 (patch)
tree7d5876e8cc71b7bd09b8ddc32c5fba1d2b090e5c
parent60bece61bcd9a53f80231da0eca58e3ffe90c171 (diff)
biology/paml: Update to 4.10.6
https://github.com/abacus-gene/paml/releases/tag/v4.10.6 Sponsored by: The FreeBSD Foundation
-rw-r--r--biology/paml/Makefile2
-rw-r--r--biology/paml/distinfo6
-rw-r--r--biology/paml/pkg-plist13
3 files changed, 6 insertions, 15 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index 7286939f9132..6a0b8081fd19 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -1,6 +1,6 @@
PORTNAME= paml
DISTVERSIONPREFIX= v
-DISTVERSION= 4.10.5
+DISTVERSION= 4.10.6
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
diff --git a/biology/paml/distinfo b/biology/paml/distinfo
index f52a021a50de..f597c10ced71 100644
--- a/biology/paml/distinfo
+++ b/biology/paml/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1661485713
-SHA256 (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 1bb40ea7c976d961a4f46b76e950423f6f252d7060bc621cbf29c9743b88a063
-SIZE (abacus-gene-paml-v4.10.5_GH0.tar.gz) = 3393889
+TIMESTAMP = 1668305503
+SHA256 (abacus-gene-paml-v4.10.6_GH0.tar.gz) = d6437f04ee233209e1ded83addbfe65d1363185877a03ba7924ce81f9ebc7777
+SIZE (abacus-gene-paml-v4.10.6_GH0.tar.gz) = 3386016
diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist
index 8ba55f7dfe03..aac062f86730 100644
--- a/biology/paml/pkg-plist
+++ b/biology/paml/pkg-plist
@@ -165,18 +165,9 @@ bin/yn00
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.trees
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtCDNAape/mtCDNAape.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mtprim9.nuc
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/codeml-M0.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.aln
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/myxo/myxovirus.tree
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata-maintree.trees
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.trees
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-ndata.txt
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/README.txt
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree-ml.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata-maintree.ctl
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.trees
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/4s-mc.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/baseml-ndata.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree-ml.ctl
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata-maintree.ctl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ndata/codeml-ndata.ctl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/pamp.ctl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/paupblock