1 files changed, 38 insertions, 20 deletions

diff --git a/lib/system_check/orphans/repository_check.rb b/lib/system_check/orphans/repository_check.rb
index 1de6bec165b..9b6b2429783 100644
--- a/lib/system_check/orphans/repository_check.rb
+++ b/lib/system_check/orphans/repository_check.rb
@@ -2,49 +2,67 @@ module SystemCheck
   module Orphans
     class RepositoryCheck < SystemCheck::BaseCheck
       set_name 'Orphaned repositories:'
+      attr_accessor :orphans
 
       def multi_check
-        Gitlab.config.repositories.storages.each do |name, repository_storage|
+        Gitlab.config.repositories.storages.each do |storage_name, repository_storage|
           $stdout.puts
-          $stdout.puts "* Storage: #{name} (#{repository_storage['path']})".color(:yellow)
+          $stdout.puts "* Storage: #{storage_name} (#{repository_storage['path']})".color(:yellow)
 
-          repositories = toplevel_namespace_dirs(repository_storage['path']).map do |path|
-            namespace = File.basename(path)
-            Dir.glob(File.join(path, '*')).map {|repo| "#{namespace}/#{File.basename(repo)}"}
-          end.try(:flatten!)
+          repositories = disk_repositories(repository_storage['path'])
+          orphans = (repositories - fetch_repositories(storage_name))
 
-          orphans = (repositories - list_repositories(name))
-          if orphans.empty?
-            $stdout.puts "* No orphaned repositories for #{name} storage".color(:green)
-            next
-          end
-
-          orphans.each do |orphan|
-            $stdout.puts " - #{orphan}".color(:red)
-          end
+          print_orphans(orphans, storage_name)
         end
       end
 
       private
 
-      def list_repositories(storage_name)
+      def print_orphans(orphans, storage_name)
+        if orphans.empty?
+          $stdout.puts "* No orphaned repositories for #{storage_name} storage".color(:green)
+          return
+        end
+
+        orphans.each do |orphan|
+          $stdout.puts " - #{orphan}".color(:red)
+        end
+      end
+
+      def disk_repositories(storage_path)
+        fetch_disk_namespaces(storage_path).each_with_object([]) do |namespace_path, result|
+          namespace = File.basename(namespace_path)
+          next if namespace.eql?('@hashed')
+
+          fetch_disk_repositories(namespace_path).each do |repo|
+            result << "#{namespace}/#{File.basename(repo)}"
+          end
+        end
+      end
+
+      def fetch_repositories(storage_name)
         sql = "
           SELECT
             CONCAT(n.path, '/', p.path, '.git') repo,
             CONCAT(n.path, '/', p.path, '.wiki.git') wiki
           FROM projects p
             JOIN namespaces n
-              ON (p.namespace_id = n.id)
+              ON (p.namespace_id = n.id AND
+                  n.parent_id IS NULL)
           WHERE (p.repository_storage LIKE ?)
         "
 
-        query = ActiveRecord::Base.send(:sanitize_sql_array, [sql, storage_name])
-        ActiveRecord::Base.connection.select_all(query).rows.try(:flatten!)
+        query = ActiveRecord::Base.send(:sanitize_sql_array, [sql, storage_name]) # rubocop:disable GitlabSecurity/PublicSend
+        ActiveRecord::Base.connection.select_all(query).rows.try(:flatten!) || []
       end
 
-      def toplevel_namespace_dirs(storage_path)
+      def fetch_disk_namespaces(storage_path)
         Dir.glob(File.join(storage_path, '*'))
       end
+
+      def fetch_disk_repositories(namespace_path)
+        Dir.glob(File.join(namespace_path, '*'))
+      end
     end
   end
 end